|
| Status |
Public on May 20, 2007 |
| Title |
Sugarcane transcriptome - Response to herbivory by Diatraea saccharalis |
| Platform organism |
Saccharum officinarum |
| Sample organism |
Saccharum hybrid cultivar SP80-3280 |
| Experiment type |
Expression profiling by array
|
| Summary |
Sugarcane stalk borer larvae were grown on artificial diet and maintained at 25°C and 60±10% relative humidity with a 14 h/10 h light/dark cycle. Second instar larvae were maintained under fasting conditions for 18 h and transferred to two-month old plants (genotype SP80-3280, CTC, Brazil). Leaves were collected after 30 min and 24 h of exposure to herbivory for the control and experimental groups. Two plantlets were used for each time point. Extraction of total RNA was performed separately on each sample pool.
Keywords: time course of stress response
|
| |
|
| Overall design |
RNA from experimental sample and from its respective control sample (untreated plants) was used for hybridization to dual channel arrays. Two biological replicates were used for each experimental point. The quantification of each hybridization was submitted in two files, one for each slide side (technical replicates).
|
| |
|
| Contributor(s) |
Barsalobres C, Medeiros AH, Silva Filho MC, Rocha FR, Papini-Terzi FS, Nishiyama-Jr MY, Vêncio RZ, Vicentini R, Souza GM |
| Citation(s) |
17355627 |
| |
| Submission date |
Jun 01, 2006 |
| Last update date |
Mar 16, 2012 |
| Contact name |
Milton Yutaka Nishiyama Jr |
| E-mail(s) |
yutakajr@gmail.com
|
| URL |
http://sucest-fun.org
|
| Organization name |
Universidade de São Paulo - USP
|
| Department |
Biochemistry
|
| Lab |
Signal Transduction Laboratory
|
| Street address |
Av. Professor Lineu Prestes, 748
|
| City |
São Paulo |
| State/province |
São Paulo |
| ZIP/Postal code |
05508-000 |
| Country |
Brazil |
| |
|
| Platforms (1) |
|
| Samples (8)
|
| GSM110470 |
Sugarcane transcriptome - ch1: Herbivory_30min_exp_1; ch2: Herbivory_control_30min_1 (L) |
| GSM110471 |
Sugarcane transcriptome - ch1: Herbivory_30min_exp_1; ch2: Herbivory_control_30min_1 (R) |
| GSM110472 |
Sugarcane transcriptome - ch2: Herbivory_30min_exp_2; ch1: Herbivory_control_30min_2 (L) |
| GSM110473 |
Sugarcane transcriptome - ch2: Herbivory_30min_exp_2; ch1: Herbivory_control_30min_2 (R) |
| GSM110474 |
Sugarcane transcriptome - ch1: Herbivory_24h_exp_1; ch2: Herbivory_control_24h_1 (L) |
| GSM110475 |
Sugarcane transcriptome - ch1: Herbivory_24h_exp_1; ch2: Herbivory_control_24h_1 (R) |
| GSM110476 |
Sugarcane transcriptome - ch2: Herbivory_24h_exp_2; ch1: Herbivory_control_24h_2 (L) |
| GSM110477 |
Sugarcane transcriptome - ch2: Herbivory_24h_exp_2; ch1: Herbivory_control_24h_2 (R) |
|
| Relations |
| BioProject |
PRJNA95467 |
Less...
More...