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Series GSE49670 Query DataSets for GSE49670
Status Public on Aug 26, 2013
Title Expression data from laser capture microdissected human atherosclerotic plaque, rich or void of plasmacytoid dendritic cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Plasmacytoid dendritic cells (pDCs) are scarcely present in the inflamed human atherosclerotic plaque, where they are presumed to exert pro-inflammatory functions through release of type I interferons. However, the precise role of pDCs in human atherosclerosis yet remains to be established.
We used microarrays to detail the global programme of gene expression underlying cellularisation and identified distinct classes of up-regulated genes during this process.
 
Overall design We investigated the impact of human plaque pDCs on its local context, applying state of the art transcriptomics analysis on Laser Capture Microdissected fractions of human atherosclerotic plaques, distinctively enriched in pDCs, or pDCs-void.
 
Contributor(s) Manca M, Christ A
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Submission date Aug 08, 2013
Last update date Aug 28, 2013
Contact name Marco Manca
E-mail(s) marco.manca@cern.ch, marco@scimpulse.org
Organization name University of Maastricht
Department CARIM
Lab Experimental Vascular Pathology
Street address P. Debyelaan 25
City Maastricht
State/province Limburg
ZIP/Postal code 6229 HX
Country Netherlands
 
Platforms (1)
GPL15034 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [HuGene10stv1_Hs_ENTREZ, Brainarray v14]
Samples (11)
GSM1204725 Carotid_shoulder_pDC_1
GSM1204726 Carotid_shoulder_pDC_2
GSM1204727 Carotid_media_pDC_1
Relations
BioProject PRJNA214692

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49670_RAW.tar 55.5 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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