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| Status |
Public on Sep 12, 2013 |
| Title |
Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression (part 1) |
| Organisms |
Drosophila melanogaster; Drosophila pseudoobscura; Drosophila virilis; Drosophila yakuba |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We sequenced mRNA from blastoderm embryos of Drosophila melanogaster, Drosophila yakuba, Drosophila pseudoobscura and Drosophila virilis. Two samples contain pooled mRNA from several species, and the remaining 24 samples contain mRNA from a single species.
Methods: Retinal mRNA profiles of Blastoderm embryos
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| |
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| Overall design |
Comparison of the evolution of gene expression and regulatory TF binding in early Drosophila embryos.
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| |
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| Contributor(s) |
Paris M, Kaplan T, Li X, Villalta JE, Lott SE, Eisen MB |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Sep 11, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Mathilde PARIS |
| E-mail(s) |
thildeparis@gmail.com
|
| Organization name |
CNRS
|
| Department |
Institut de Genomique Fonctionnelle de Lyon
|
| Street address |
32-34 avenue Tony Garnier
|
| City |
Lyon |
| ZIP/Postal code |
69006 |
| Country |
France |
| |
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| Platforms (6)
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| GPL9061 |
Illumina Genome Analyzer II (Drosophila melanogaster) |
| GPL9958 |
Illumina Genome Analyzer II (Drosophila pseudoobscura) |
| GPL10061 |
Illumina Genome Analyzer II (Drosophila yakuba) |
| GPL13312 |
Illumina Genome Analyzer II (Drosophila virilis) |
| GPL17715 |
Illumina Genome Analyzer II (Drosophila melanogaster; Drosophila pseudoobscura; Drosophila virilis) |
| GPL17716 |
Illumina Genome Analyzer II (Drosophila pseudoobscura; Drosophila virilis; Drosophila yakuba) |
|
| Samples (26)
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| This SubSeries is part of SuperSeries: |
| GSE50773 |
Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression |
|
| Relations |
| BioProject |
PRJNA218868 |
| SRA |
SRP029884 |
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