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| Status |
Public on Sep 19, 2013 |
| Title |
Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees |
| Organisms |
Apis mellifera; Apis mellifera scutellata |
| Experiment type |
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
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| Summary |
Honey bee non-CG DNA hydroxymethylation is enriched in the introns, which supplements previous findings that honey bee CG DNA methylation is enriched in exons.
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| Overall design |
Bisulfite sequencing combined with Pvu-Seq to distinguish 5-methylcytosine from 5-hydroxymethylcytosine and RNA-Seq
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| Contributor(s) |
Cingolani P, Cao X, Khetani R, Chen C, Coon M, Sammak A, Bollig-Fischer A, Land S, Huang Y, Hudson ME, Garfinkel MD, Zhong S, Robinson GE, Ruden DM |
| Citation(s) |
24079845 |
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| Submission date |
Sep 18, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Pablo Cingolani |
| E-mail(s) |
pablo.e.cingolani@gmail.com
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| Organization name |
McGill University
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| Street address |
701 Avenue du Docteur-Penfield
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| City |
Montréal |
| State/province |
Quebec |
| ZIP/Postal code |
H3A-1A5 |
| Country |
Canada |
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| Platforms (2) |
| GPL9909 |
Illumina Genome Analyzer II (Apis mellifera) |
| GPL17742 |
Illumina Genome Analyzer II (Apis mellifera scutellata) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA219484 |
| SRA |
SRP030016 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE50990_RAW.tar |
1.0 Gb |
(http)(custom) |
TAR (of BED, TXT, VCF) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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