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Series GSE52294 Query DataSets for GSE52294
Status Public on Nov 13, 2013
Title Genome-wide analysis of gene expression in mouse spleen stroma
Organism Mus musculus
Experiment type Expression profiling by array
Summary Comparison between gene expression profiles of splenic stroma from wild type and lymphotoxin beta receptor knockout mice. The goal was to identify a set of genes which expression in splenic stroma is under lymphotoxin control and which can potentially be important for proper stroma development and function in secondary lymphoid organs.
 
Overall design Total RNA isolated from mechanically separated stroma and splenocytes of wild type and LTbR-KO mice, as well as cultured spleen stroma cells from wild type mice.
technical replicate - extract: A,B
technical replicate - extract: C,D
technical replicate - extract: E,F
technical replicate - extract: G,H
 
Contributor(s) Britanova LV, Kuchmiy AA, Afanasyeva MA, Kuprash DV
Citation(s) 24865838
Submission date Nov 12, 2013
Last update date Feb 03, 2020
Contact name Marina Alekseevna Afanasyeva
E-mail(s) m.a.afanasyeva@gmail.com
Phone +79263077071
Organization name Engelhardt Institute of Molecular Biology, RAS
Lab laboratory of immunoregulation
Street address Vavilova 32
City Moscow
ZIP/Postal code 119991
Country Russia
 
Platforms (1)
GPL6103 Illumina mouseRef-8 v1.1 expression beadchip
Samples (8)
GSM1262588 StromaWT_cultured_rep1
GSM1262589 StromaWT_cultured_rep2
GSM1262590 StromaWT_fresh_rep1
Relations
BioProject PRJNA227349

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52294_4256257055.sdf.gz 2.9 Kb (ftp)(http) SDF
GSE52294_4256257055_fiducial__1_Red_center.tif.gz 230.3 Kb (ftp)(http) TIFF
GSE52294_4256257055_fiducial__2_Red_center.tif.gz 231.2 Kb (ftp)(http) TIFF
GSE52294_4256257055_fiducial__3_Red_center.tif.gz 232.6 Kb (ftp)(http) TIFF
GSE52294_RAW.tar 14.8 Mb (http)(custom) TAR (of IDAT, JPG, XML)
GSE52294_non-normalized.txt.gz 1.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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