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Series GSE52967 Query DataSets for GSE52967
Status Public on Apr 18, 2015
Title Primary bovine extra-embryonic cultured cells: a new resource for the study of in vivo peri-implanting phenotypes and mesoderm formation
Organism Bos taurus
Experiment type Expression profiling by array
Summary In addition to nourishing the embryo, extra-embryonic tissues (EETs) contribute to early embryonic patterning, primitive hematopoiesis, and fetal health. These tissues are of major importance for human medicine, as well as for efforts to improve livestock efficiency, but they remain incompletely understood. In bovines, EETs are accessible easily, in large amounts, and prior to implantation. We took advantage of this system to describe, in vitro and in vivo, the cell types present in bovine EETs at Day 18 of development. Specifically, we characterized the gene expression patterns and phenotypes of bovine extra-embryonic ectoderm (or trophoblast; bTC), endoderm (bXEC), and mesoderm (bXMC) cells in culture and compared them to their respective in vivo micro-dissected cells. After a week of culture, certain characteristics (e.g., gene expression) of the in vitro cells were altered with respect to the in vivo cells, but we were able to identify “cores” of cell-type-specific (and substrate-independent) genes that were shared between in vitro and in vivo samples. In addition, many cellular phenotypes were cell-type-specific with regard to extracellular adhesion. We evaluated the ability of individual bXMCs to migrate and spread on micro-patterns, and observed that they easily adapted to diverse environments, similar to in vivo EE mesoderm cells, which encounter different EE epithelia to form chorion, yolk sac, and allantois. With these tissue interactions, different functions arose that were detected in silico and corroborated in vivo at D21-D25. Moreover, analysis of bXMCs allowed us to identify the EE cell ring surrounding the embryonic disc (ED) at D14-15 as mesoderm cells, which had been hypothesized but not shown prior to this study. We envision these data will serve as a major resource for the future in the analysis of peri-implanting phenotypes in response to the maternal metabolism and contribute to subsequent studies of placental/fetal development in eutherians.
 
Overall design Amplified material was indirectly labelled using "random" hexamers. One independent target was generated and hybridised onto one array. 1-3 measurements per cell type were generated.
 
Contributor(s) Hue I, Evain-Brion D, Fournier T, Degrelle SA
Citation(s) 26070137, 26697347
Submission date Dec 04, 2013
Last update date Dec 24, 2015
Contact name Severine Aude Degrelle
E-mail(s) severine.degrelle@inserm.fr
Organization name INSERM UMRS-1139
Street address 4 avenue de l'Observatoire
City PARIS
ZIP/Postal code 75006
Country France
 
Platforms (1)
GPL7417 INRA-BDR Bovine 10k
Samples (14)
GSM1279552 dissected_bD18ED_1
GSM1279553 dissected_bD18ED_2
GSM1279554 cultured_bTC_1
Relations
BioProject PRJNA230971

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52967_RAW.tar 16.9 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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