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Series GSE53101 Query DataSets for GSE53101
Status Public on Sep 17, 2014
Title Temporal gene expression profiling of myeloid cells during the peritoneal foreign body response
Organism Mus musculus
Experiment type Expression profiling by array
Summary This study dermined the temporal gene expression profile of myeloid subpopulations recruited to the peritoneal cavity to encapsulate implanted foreign material.
 
Overall design Sterile foreign objects were inserted into the peritoneal cavities of MacGreen mice (in which the Csf1r promoter directs myeloid-specific EGFP expression). At various time-points post-surgery (days 2, 4, 7, 14), mice were euthanased, and peritoneal exudate cells removed by lavage. Peritoneal exudate cells from MacGreen mice that had not received implants were used as controls (day 0; 'unstimulated'). Free-floating objects encapsulated with tissue were removed from the peritoneal cavities of different mice at days 7, 14, 21, 28 days, and single cell suspensions obtained by collagenase digestion. Single-cell suspensions from peritoneal exudate or tissue capsules were separated on the basis of size/granularity and EGFP fluorescence using FacsVantage SE Diva. Total RNA was extracted from FACS-sorted EGFP-hi cells.
 
Contributor(s) Mooney JE, Summers KM, Grimmond SM, Gongora M, Campbell JH, Hume DA, Rolfe BE
Citation(s) 24638066
Submission date Dec 06, 2013
Last update date Sep 18, 2014
Contact name Othmar Korn
Organization name Australian Institute for Bioengineering and Nanotechnology
Street address University of Queensland
City St. Lucia
State/province Queensland
ZIP/Postal code 4067
Country Australia
 
Platforms (1)
GPL6105 Illumina mouse-6 v1.1 expression beadchip
Samples (18)
GSM1282367 Day 0_L rep1
GSM1282368 Day 2_L rep1
GSM1282369 Day 4_L rep1
Relations
BioProject PRJNA230834

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53101_RAW.tar 5.2 Mb (http)(custom) TAR
GSE53101_non-normalized.txt.gz 5.9 Mb (ftp)(http) TXT
Processed data included within Sample table

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