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| Status |
Public on Dec 20, 2013 |
| Title |
INTERACTIONS BETWEEN CYANOBACTERIA AND HETEROTROPHS UNDER DIFFERENT TROPHIC CONDITIONS |
| Organisms |
Picosynechococcus sp. PCC 7002; Shewanella sp. W3-18-1 |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Application of genome-scale 'omics approaches to dissect subcellular pathways and regulatory networks governing interspecies interactions is dependent, at least initially, on the availability of model systems with well-annotated genomes and tractable genetics.
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| Overall design |
We employed controlled cultivation and next-generation sequencing technology to identify transcriptional responses of euryhaline unicellular cyanobacterium Synechococcus sp. PCC 7002 and a marine facultative aerobe Shewanella putrefaciens W3-18-1 to investigate the effect of C sources and C flux directions on the interactions between these organisms.
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| Contributor(s) |
Beliaev AS, Romine MF, Serres M, Bernstein HC, Linggi BE, Markillie L, Insern NG, Chrisler WB, Kucek LA, Hill EA, Pinchuk GE, Bryant DA, Wiley H, Fredrickson JK, Konopka A |
| Citation(s) |
24781900 |
| |
| Submission date |
Dec 16, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Lye Meng Markillie |
| E-mail(s) |
Meng.markillie@pnnl.gov
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| Phone |
509 371 7300
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| Organization name |
Environmental Molecular Sciences Laboratory
|
| Department |
Biosystems Dynamics & Simulation
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| Lab |
Cell Isolation and Systems Analysis
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| Street address |
902 Battelle Blvd
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| City |
Richland |
| State/province |
WA |
| ZIP/Postal code |
99352 |
| Country |
USA |
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| Platforms (3) |
| GPL18074 |
AB 5500xl Genetic Analyzer (Synechococcus sp. PCC 7002) |
| GPL18075 |
AB 5500xl Genetic Analyzer (Shewanella sp. W3-18-1) |
| GPL21815 |
AB 5500xl Genetic Analyzer (Shewanella sp. W3-18-1; Synechococcus sp. PCC 7002) |
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| Samples (10)
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| Relations |
| BioProject |
PRJNA231839 |
| SRA |
SRP034523 |
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