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Status |
Public on Dec 21, 2013 |
Title |
Su(H)_Kc_cells_ChIP-seq |
Project |
modENCODE
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Organism |
Drosophila melanogaster |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
modENCODE_submission_5018 This submission comes from a modENCODE project of Kevin White. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The White Lab is aiming to map the association of all the Transcription Factors (TF) on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation coupled with deep sequencing (ChIP-seq) utilizing an Illumina next generation sequencing platform. The data generated by ChIP-seq experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested TF. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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Overall design |
EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Cell Line: Kc167; Tissue: embryo-derived cell-line; Developmental Stage: late embryonic stage; Genotype: se/e; Sex: Female; EXPERIMENTAL FACTORS: Antibody Su(H) (target is fly genes:Su(H)); Cell Line Kc167
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Web link |
http://www.modencode.org
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Contributor(s) |
White K, Ma L, Slattery M |
Citation missing |
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BioProject |
PRJNA63467 |
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Submission date |
Dec 20, 2013 |
Last update date |
May 15, 2019 |
Contact name |
DCC modENCODE |
E-mail(s) |
help@modencode.org
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Phone |
416-673-8579
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Organization name |
Ontario Institute for Cancer Research
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Lab |
modENCODE DCC
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Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
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City |
Toronto |
State/province |
Ontario |
ZIP/Postal code |
M5G 0A3 |
Country |
Canada |
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Platforms (1) |
GPL9058 |
Illumina Genome Analyzer (Drosophila melanogaster) |
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Samples (4)
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GSM1296169 |
Su(H) Kc167 late embryonic D.melanogaster Input |
GSM1296170 |
Su(H) Kc167 late embryonic D.melanogaster ChIP Rep1 |
GSM1296171 |
Su(H) Kc167 late embryonic D.melanogaster ChIP Rep2 |
GSM1296172 |
Su(H) Kc167 late embryonic D.melanogaster ChIP Rep3 |
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Relations |
SRA |
SRP005957 |