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Series GSE53561 Query DataSets for GSE53561
Status Public on Dec 21, 2013
Title Su(H)_Kc_cells_ChIP-seq
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary modENCODE_submission_5018
This submission comes from a modENCODE project of Kevin White. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: The White Lab is aiming to map the association of all the Transcription Factors (TF) on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation coupled with deep sequencing (ChIP-seq) utilizing an Illumina next generation sequencing platform. The data generated by ChIP-seq experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested TF.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Cell Line: Kc167; Tissue: embryo-derived cell-line; Developmental Stage: late embryonic stage; Genotype: se/e; Sex: Female; EXPERIMENTAL FACTORS: Antibody Su(H) (target is fly genes:Su(H)); Cell Line Kc167
Web link http://www.modencode.org
 
Contributor(s) White K, Ma L, Slattery M
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA63467
Submission date Dec 20, 2013
Last update date May 15, 2019
Contact name DCC modENCODE
E-mail(s) help@modencode.org
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Lab modENCODE DCC
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platforms (1)
GPL9058 Illumina Genome Analyzer (Drosophila melanogaster)
Samples (4)
GSM1296169 Su(H) Kc167 late embryonic D.melanogaster Input
GSM1296170 Su(H) Kc167 late embryonic D.melanogaster ChIP Rep1
GSM1296171 Su(H) Kc167 late embryonic D.melanogaster ChIP Rep2
Relations
SRA SRP005957

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53561_5018_peaks.GFF3.gz 194.7 Kb (ftp)(http) GFF3
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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