|
| Status |
Public on Feb 13, 2014 |
| Title |
Genomic occupancy of Runx2 with global expression profiling identifies a novel dimension to the control of osteoblastogenesis |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
24655370 |
| Submission date |
Jan 13, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Jonathan AR Gordon |
| E-mail(s) |
Jonathan.A.Gordon@uvm.edu
|
| Organization name |
University of Vermont
|
| Department |
Biochemistry
|
| Street address |
89 Beaumont Ave Given E209
|
| City |
Burlington |
| State/province |
VT |
| ZIP/Postal code |
05405 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL6246 |
[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version] |
| GPL9250 |
Illumina Genome Analyzer II (Mus musculus) |
|
| Samples (13)
|
| GSM1304768 |
MC3T3-E1 cells at day 0 treated with scramble shRNA, biological replicate 1 |
| GSM1304769 |
MC3T3-E1 cells at day 0 treated with scramble shRNA, biological replicate 2 |
| GSM1304770 |
MC3T3-E1 cells at day 0 treated with scramble shRNA, biological replicate 3 |
| GSM1304771 |
MC3T3-E1 cells at day 9 treated with scramble shRNA, biological replicate 1 |
| GSM1304772 |
MC3T3-E1 cells at day 9 treated with scramble shRNA, biological replicate 2 |
| GSM1304773 |
MC3T3-E1 cells at day 9 treated with scramble shRNA, biological replicate 3 |
| GSM1304774 |
MC3T3-E1 cells at day 9 treated with Runx2 shRNA, biological replicate 1 |
| GSM1304775 |
MC3T3-E1 cells at day 9 treated with Runx2 shRNA, biological replicate 2 |
| GSM1304776 |
MC3T3-E1 cells at day 9 treated with Runx2 shRNA, biological replicate 3 |
| GSM1305862 |
Input DNA |
| GSM1305863 |
Runx2_day0_ChIP-Seq |
| GSM1305864 |
Runx2_day9_ChIP-Seq |
| GSM1305865 |
Runx2_day28_ChIP-Seq |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE53982 |
Runx2-mediated gene regulation is affected by its genomic occupancy |
| GSE54013 |
Genome-wide mapping of Runx2 occupancy during the proliferation, matrix deposition, and mineralization stages of preosteoblast |
|
| Relations |
| BioProject |
PRJNA234354 |
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