NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE54345 Query DataSets for GSE54345
Status Public on Sep 01, 2014
Title 12plex_vitis_2011_02_48h
Organism Vitis vinifera
Experiment type Expression profiling by array
Summary 12plex_vitis_2011_02_48h - Biological question (15 lines max):
Identification of grape genes regulated in response to resistance inducer treatments.

This transcriptomic analysis should provide insight in the mode of action of the compounds under study and yield generic data relevant to grape defense reaction.
The experiment took place in the greenhouse. Six week-herbaceous grape cutting (cv Marselan) were spray-treated with 5 resistance inducers, an adjuvant (used along with some inducers) and water as control. Plants were inoculated by Plasmopara viticola (downy midew) 24h post-treatment. We used 5 plants per treatment. Leaf samples were harvested 24h post-treatment and 48h post-inoculation. Three biological repetitions were done. Each hybridization experiment was performed in comparison with water.
 
Overall design 18 dye-swap - normal vs disease comparison
Web link http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/consult_expce.pl?experiment_id=529
 
Contributor(s) Huguet S, Daire X, Balzergue S, Martin-Magniette M
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jan 23, 2014
Last update date Sep 02, 2014
Contact name Stéphanie Pateyron
E-mail(s) pateyron@evry.inra.fr
Organization name IPS2_Institute of Plant Sciences Paris-Saclay
Lab Transcriptomic Plateforme POPS
Street address Rue de Noetzlin _ Batiment 630
City Orsay
ZIP/Postal code 91405
Country France
 
Platforms (1)
GPL18213 NimbleGen Vitis vinifera array [090918_Vitus_exp]
Samples (36)
GSM1313531 534105A01 - 36_WATER_48H_REP3 vs 37_ADJ_48H_REP3
GSM1313532 534105A02 - 37_ADJ_48H_REP3 vs 36_WATER_48H_REP3
GSM1313533 534108A01 - 22_WATER_48H_REP2 vs 23_ADJ_48H_REP2
This SubSeries is part of SuperSeries:
GSE54347 Identification of grape genes regulated in response to resistance inducer treatments
Relations
BioProject PRJNA236244

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54345_RAW.tar 160.8 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap