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GEO accession:
Series GSE54364
Query DataSets for GSE54364
Status
Public on Jan 24, 2014
Title
A high-resolution Amphimedon queenslandica transriptomic timecourse
Organism
Amphimedon queenslandica
Experiment type
Expression profiling by high throughput sequencing
Summary
Transcriptomic data for 59 single embryos and larvae samples of the sponge Amphimedon queenslandica
Overall design
Transcriptomic data for 59 single embryos and larvae samples of the sponge Amphimedon queenslandica
Contributor(s)
Anavy L
,
Levin M
,
Khair S
,
Nakanishi N
,
Fernandez-Valverde SL
,
Degnan BM
,
Yanai I
Citation(s)
24504336
,
25976353
,
25975661
Submission date
Jan 23, 2014
Last update date
Aug 09, 2019
Contact name
Itai Yanai
E-mail(s)
yanai@technion.ac.il
Organization name
Technion - Israel Institute of Technology
Department
Biology
Lab
Yanai
Street address
Technion City
City
Haifa
ZIP/Postal code
30200
Country
Israel
Platforms (1)
GPL18214
Illumina HiSeq 2000 (Amphimedon queenslandica)
Samples (59)
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GSM1313863
Sample 1 Late ring (cylinder)
GSM1313864
Sample 10 Cloud
GSM1313865
Sample 13 Ring (round)
GSM1313866
Sample 17 Cloud
GSM1313867
Sample 19 Late ring (cylinder)
GSM1313868
Sample 2 Ring (round)
GSM1313869
Sample 22 Free-swimming larvae (released in a two-hour period between 12-2pm)
GSM1313870
Sample 25 Free-swimming larvae (released in a two-hour period between 12-2pm)
GSM1313871
Sample 3 Cleavage
GSM1313872
Sample 4 Brown
GSM1313873
Sample 5 Brown
GSM1313874
Sample 6 Cloud
GSM1313875
Sample 7 Late spot
GSM1313876
Sample 8 Cloud
GSM1313877
Sample 9 Brown
GSM1313878
Sample 26 Ring (round)
GSM1313879
Sample 27 Late ring (cylinder)
GSM1313880
Sample 28 Brown
GSM1313881
Sample 29 Free-swimming larvae (released in a two-hour period between 12-2pm)
GSM1313882
Sample 30 Spot
GSM1313883
Sample 32 Late ring (cylinder)
GSM1313884
Sample 34 Free-swimming larvae (released in a two-hour period between 12-2pm)
GSM1313885
Sample 35 Cleavage
GSM1313886
Sample 38 Late ring (cylinder)
GSM1313887
Sample 39 Cleavage
GSM1313888
Sample 40 Spot
GSM1313889
Sample 41 Free-swimming larvae (released in a two-hour period between 12-2pm)
GSM1313890
Sample 42 Ring (round)
GSM1313891
Sample 43 Free-swimming larvae (released in a two-hour period between 12-2pm)
GSM1313892
Sample 46 Free-swimming larvae (released in a two-hour period between 12-2pm)
GSM1313893
Sample 48 Spot
GSM1313894
Sample 50 Cleavage
GSM1313895
Sample 51 Cloud
GSM1313896
Sample 57 Late ring (cylinder)
GSM1313897
Sample 59 Brown
GSM1313898
Sample 60 Brown
GSM1313899
Sample 62 Late spot
GSM1313900
Sample 63 Brown
GSM1313901
Sample 64 Cloud
GSM1313902
Sample 65 Cleavage
GSM1313903
Sample 66 Spot
GSM1313904
Sample 68 Cloud
GSM1313905
Sample 70 Ring (round)
GSM1313906
Sample 74 Spot
GSM1313907
Sample 100 Cleavage
GSM1313908
Sample 78 Spot
GSM1313909
Sample 79 Late spot
GSM1313910
Sample 81 Free-swimming larvae (released in a two-hour period between 12-2pm)
GSM1313911
Sample 84 Free-swimming larvae (released in a two-hour period between 12-2pm)
GSM1313912
Sample 85 Ring (round)
GSM1313913
Sample 86 Ring (round)
GSM1313914
Sample 87 Spot
GSM1313915
Sample 88 Late spot
GSM1313916
Sample 94 Free-swimming larvae (released in a two-hour period between 12-2pm)
GSM1313917
Sample 95 Late spot
GSM1313918
Sample 96 Free-swimming larvae (released in a two-hour period between 12-2pm)
GSM1313919
Sample 97 Late spot
GSM1313920
Sample 98 Late ring (cylinder)
GSM1313921
Sample 99 Cleavage
Relations
BioProject
PRJNA236322
SRA
SRP035637
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE54364_Aqu1_exon.gtf.gz
2.0 Mb
(ftp)
(http)
GTF
GSE54364_expression_dataset.csv.gz
2.1 Mb
(ftp)
(http)
CSV
GSE54364_expression_dataset_reads.csv.gz
1016.4 Kb
(ftp)
(http)
CSV
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
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