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GEO accession:
Series GSE54380
Query DataSets for GSE54380
Status
Public on Mar 01, 2014
Title
Genome-wide chromatin maps of T-cell acute lymphoblastic leukemia (T-ALL)
Organism
Homo sapiens
Experiment type
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Contributor(s)
Knoechel B
,
Zhu J
,
Bernstein BE
Citation(s)
24584072
Submission date
Jan 24, 2014
Last update date
May 15, 2019
Contact name
Jiang Zhu
E-mail(s)
jzhu@mgh.harvard.edu
Organization name
Massachusetts General Hospital, Harvard Medical School and Broad Institute
Lab
Bradley Bernstein Lab
Street address
185 Cambridge Street
City
Boston
State/province
MA
ZIP/Postal code
02114
Country
USA
Platforms (2)
GPL570
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
Samples (36)
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GSM1314113
Gene expression in KOPT-K1 naïve, rep1
GSM1314114
Gene expression in KOPT-K1 naïve, rep2
GSM1314115
Gene expression in KOPT-K1 persister, rep1
GSM1314116
Gene expression in KOPT-K1 persister, rep2
GSM1314117
Gene expression in DND-41 naïve, rep1
GSM1314118
Gene expression in DND-41 naïve, rep2
GSM1314119
Gene expression in DND-41 persister, rep1
GSM1314120
Gene expression in DND-41 persister, rep2
GSM1314121
BRD4 ChIP-seq in KOPT-K1
GSM1314122
H3K27ac ChIP-seq in KOPT-K1
GSM1314123
H3K27me3 ChIP-seq in KOPT-K1
GSM1314124
H3K36me3 ChIP-seq in KOPT-K1
GSM1314125
H3K4me1 ChIP-seq in KOPT-K1
GSM1314126
H3K4me3 ChIP-seq in KOPT-K1
GSM1314127
Whole Cell Extracts in KOPT-K1
GSM1314128
BRD4 ChIP-seq in KOPT-K1 persisters
GSM1314129
H3K27ac ChIP-seq in KOPT-K1 persisters
GSM1314130
H3K27me3 ChIP-seq in KOPT-K1 persisters
GSM1314131
H3K36me3 ChIP-seq in KOPT-K1 persisters
GSM1314132
H3K4me1 ChIP-seq in KOPT-K1 persisters
GSM1314133
H3K4me3 ChIP-seq in KOPT-K1 persisters
GSM1314134
Whole Cell Extracts in KOPT-K1 persisters
GSM1314135
BRD4 ChIP-seq in DND-41
GSM1314136
H3K27ac ChIP-seq in DND-41
GSM1314137
H3K27me3 ChIP-seq in DND-41
GSM1314138
H3K36me3 ChIP-seq in DND-41
GSM1314139
H3K4me1 ChIP-seq in DND-41
GSM1314140
H3K4me3 ChIP-seq in DND-41
GSM1314141
Whole Cell Extracts in DND-41
GSM1314142
BRD4 ChIP-seq in DND-41 persisters
GSM1314143
H3K27ac ChIP-seq in DND-41 persisters
GSM1314144
H3K27me3 ChIP-seq in DND-41 persisters
GSM1314145
H3K36me3 ChIP-seq in DND-41 persisters
GSM1314146
H3K4me1 ChIP-seq in DND-41 persisters
GSM1314147
H3K4me3 ChIP-seq in DND-41 persisters
GSM1314148
Whole Cell Extracts in DND-41 persisters
This SuperSeries is composed of the following SubSeries:
GSE54378
Gene expression profiles of T-cell acute lymphoblastic leukemia cell lines with and without chronic GSI-treatment
GSE54379
Genome-wide chromatin maps of T-cell acute lymphoblastic leukemia (T-ALL) [ChIP-seq]
Relations
BioProject
PRJNA236369
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE54380_RAW.tar
1.6 Gb
(http)
(custom)
TAR (of BW, CEL)
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