NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE54728 Query DataSets for GSE54728
Status Public on Feb 03, 2015
Title Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation
Organisms Arabidopsis thaliana; Arabis alpina; Arabidopsis lyrata
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation Eva-Maria Willing, Vimal Rawat, Terezie Mandáková, Florian Maumus, Geo Velikkakam James, Karl J.V. Nordström, Claude Becker, Norman Warthmann, Claudia Chica, Bogna Szarzynska, Matthias Zytnicki, Maria C. Albani, Christiane Kiefer, Sara Bergonzi, Loren Castaings, Julieta L. Mateos, Markus C. Berns, Nora Bujdoso, Thomas Piofczyk, Laura de Lorenzo, Cristina Barrero-Sicilia, Isabel Mateos, Mathieu Piednoël, Jörg Hagmann, Romy Chen-Min-Tao, Raquel Iglesias-Fernández, Stephan C. Schuster, Carlos Alonso-Blanco, François Roudier, Pilar Carbonero, Javier Paz-Ares, Seth J. Davis, Ales Pecinka, Hadi Quesneville, Vincent Colot, Martin A. Lysak, Detlef Weigel, George Coupland & Korbinian Schneeberger. Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nat Plants 2015;1:23. http://dx.doi.org/10.1038/nplants.2014.23
Submission date Feb 06, 2014
Last update date May 15, 2019
Contact name François ROUDIER
E-mail(s) francois.roudier@ens-lyon.fr
Organization name Ecole Normale Supérieure de Lyon
Department Biologie
Lab RDP
Street address 46 Allée d'Italie
City Lyon
ZIP/Postal code 69364
Country France
 
Platforms (3)
GPL11221 Illumina Genome Analyzer IIx (Arabidopsis thaliana)
GPL16940 Illumina Genome Analyzer IIx (Arabidopsis lyrata)
GPL18238 Illumina Genome Analyzer IIx (Arabis alpina)
Samples (30)
GSM1318862 Aa_H3K4me3_rep1
GSM1318863 Aa_H3K4me3_rep2
GSM1318864 Aa_H3K27me3_rep1
This SuperSeries is composed of the following SubSeries:
GSE54560 Genome-wide profiling of H3K4me3, H3K27me3 H3K27me1 and 5mC enrichment and mRNA levels in young leaves of Arabis alpina
GSE54727 Genome-wide profiling of H3K4me3, H3K27me3 H3K27me1 and 5mC enrichment and mRNA levels in young leaves of Arabidopsis lyrata
GSE54894 Genome-wide profiling of H3K27me1 and 5mC enrichment in young leaves of Arabidopsis thaliana
Relations
BioProject PRJNA237511

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided
SRA Run SelectorHelp
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap