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| Status |
Public on Feb 18, 2016 |
| Title |
Relative tRNA abundance in Lactococcus lactis as a function of growth rate and overexpression stress |
| Organism |
Lactococcus lactis |
| Experiment type |
Non-coding RNA profiling by array
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| Summary |
Comparison of overall tRNA level in Lactococcus lactis affected by the growth rate and as a response to the overexpression of the membrane protein OpuA.
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| Overall design |
Lactococcus lactis with growth rate 0.15 h was compared to Lactococcus lactis with growth rates 0.3 h, 0.5 h and 0.6 h. Lactococcus lactis just prior to the induction of the expression of OpuA was compared to Lactococcus lactis after induction of expression of OpuA and to Lactococcus lactis in stationary phase. 2 biological replica.
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| Contributor(s) |
Puri P, Saffert P |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Feb 25, 2014 |
| Last update date |
Feb 19, 2016 |
| Contact name |
Paul Georg Saffert |
| E-mail(s) |
psaffert@gmx.de
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| Organization name |
University of Potsdam
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| Department |
Biochemistry
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| Lab |
Ignatova
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| Street address |
Karl-Liebknecht Straße 24-25
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| City |
Potsdam |
| State/province |
Brandenburg |
| ZIP/Postal code |
14476 |
| Country |
Germany |
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| Platforms (1) |
| GPL18332 |
Lactococcus lactis transfer RNA array |
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| Samples (14)
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| GSM1334340 |
growth rate 0.15 h vs. growth rate 0.15 h, replica 1 |
| GSM1334341 |
growth rate 0.15 h vs. growth rate 0.3 h, replica 1 |
| GSM1334342 |
growth rate 0.15 h vs. growth rate 0.5 h, replica 1 |
| GSM1334343 |
growth rate 0.15 h vs. growth rate 0.6 h, replica 1 |
| GSM1334344 |
growth rate 0.15 h vs. growth rate 0.15 h, replica 2 |
| GSM1334345 |
growth rate 0.15 h vs. growth rate 0.3 h, replica 2 |
| GSM1334346 |
growth rate 0.15 h vs. growth rate 0.5 h, replica 2 |
| GSM1334347 |
growth rate 0.15 h vs. growth rate 0.6 h, replica 2 |
| GSM1334348 |
homeostasis 1 versus homeostasis 1, replica 1 |
| GSM1334349 |
homeostasis 1 versus homeostasis 2, replica 1 |
| GSM1334350 |
homeostasis 1 versus homeostasis 3, replica 1 |
| GSM1334351 |
homeostasis 1 versus homeostasis 1, replica 2 |
| GSM1334352 |
homeostasis 1 versus homeostasis 2, replica 2 |
| GSM1334353 |
homeostasis 1 versus homeostasis 3, replica 2 |
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| Relations |
| BioProject |
PRJNA239353 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE55336_RAW.tar |
690.0 Kb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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