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| Status |
Public on Dec 11, 2022 |
| Title |
Analysis of the impact of FOXA1 expression on MDA::ER E2-sensitive transcriptomes and ER cistromes [ChIP-Seq data] |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
The primordial actions of the estrogen receptor alpha (ER) in controlling breast cancer cells proliferation rate are particularly documented. However, reintroducing ER into ER-negative cells does not reprogram their transcriptome towards an estrogen-sensitive growth phenotype. Member of the Forkhead (FKH) family of transcription factors, FOXA1 has been characterized to be essential for the appropriate binding of ER onto chromatin in MCF-7 cells. FOXA1 pioneering actions involve modulations of histone post-translational modifications (HPTMs) and local depletion in methylated CpGs. Using MDA-MB231 cells which are ER and FOXA1 negative, we aimed at determining whether the introduction of ER and FOXA1 would be sufficient to restore an estrogen-sensitive growth and to coincidently reprogram chromatin. We used ChIP-seq experiments to map ER and FOXA1 binding sites (BSs) and to profile H3K4me2 and H3K27ac marks, and surprisingly observed that FOXA1 had rather a global negative impact on ER actions, associated with an inhibition of growth and a reorientation of the transcriptome of the cells towards cell death. We demonstrate that the re-introduction of FOXA1 in these cells actually competes for the binding and pioneering actions of FOXA2, another FKH protein, on a number of ER BSs. As demonstrated for its alter ego FOXA1 in MCF-7 cells, abrogating FOXA2 expression drastically diminished ER binding onto its cognate sites, associated with a local loss of HPTMs for active chromatin.
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| Overall design |
Whole-genome analysis of estrogen receptor (ER) and its FOXA1 and/or FOXA2 pioneering factors binding events associated with the cartography of two histone marks (H3K4me2 and H3K27ac) in four ER/FOXA1 positive or negative breast cancer cells.
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| Contributor(s) |
Quintin J, Le Péron C, Mahé E, Seérandour AA, Palierne G, Bizot M, Percevault F, Avner S, Salbert G, Métivier R |
| Citation missing |
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| |
| Submission date |
Mar 10, 2014 |
| Last update date |
Dec 12, 2022 |
| Contact name |
Raphaël Métivier |
| E-mail(s) |
raphael.metivier@univ-rennes1.fr
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| Organization name |
CNRS UMR 6290
|
| Lab |
SP@RTE
|
| Street address |
Campus de Beaulieu
|
| City |
Rennes |
| ZIP/Postal code |
35042 Cedex |
| Country |
France |
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| Platforms (2) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (19)
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| This SubSeries is part of SuperSeries: |
| GSE55741 |
Analysis of the impact of FOXA1 expression on MDA::ER E2-sensitive transcriptomes and ER cistromes |
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| Relations |
| BioProject |
PRJNA241009 |
| SRA |
SRP039963 |
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