|
| Status |
Public on Sep 10, 2014 |
| Title |
Transcriptome profiling of Arabidopsis smg7 mutant in immune signaling blocked background |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Goal of the study is the identification of transcriptome deregulation of smg7 pad4 mutants, which are deficient in nonsense-mediated mRNA decay and are blocked in immune signaling, which should avoid secondary responses from immune signaling
|
| |
|
| Overall design |
Total RNA (ribosomal RNA depleted) illumina sequencing of three single end libraries respectively of adult pad4 leaves (control) vs adult smg7 pad4 mutant leaves (mutant)
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| |
|
| Contributor(s) |
Gloggnitzer J, Srinivasan A, Jimenez-Gomez J, Riha K |
| Citation(s) |
25211079 |
| |
| Submission date |
Mar 13, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Jiradet Gloggnitzer |
| E-mail(s) |
jiradet.gloggnitzer@gmi.oeaw.ac.at
|
| Organization name |
Gregor Mendel Institute of Molecular Plant Biology
|
| Lab |
Karel Riha
|
| Street address |
Dr.-Bohr-Gasse 3
|
| City |
Vienna |
| ZIP/Postal code |
1030 |
| Country |
Austria |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA241198 |
| SRA |
SRP040120 |
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