|
| Status |
Public on Jul 10, 2014 |
| Title |
Examination of the transcirptional response of Acinetobacter baumannii to antibiotics |
| Organisms |
Acinetobacter baumannii 34654; Acinetobacter sp. 983759; Acinetobacter sp. 1592897; Acinetobacter baumannii 1457504; Acinetobacter sp. 478810; Acinetobacter sp. 1564232; Acinetobacter baumannii 1207552; Acinetobacter baumannii 1428368; Acinetobacter sp. 1000160 |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below. Strains of A. baumannii were exposed to sub-MIC doses of clinically relevant antibiotics to determine the transcriptional response
|
| |
|
| Overall design |
Refer to individual Series. Duplicate RNA samples were sequenced using the Illumina HiSeq.
|
| |
|
| Contributor(s) |
Hazen TH, Johnson JK, Harris AD, Rasko DA |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA234525 |
| Submission date |
Mar 26, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
David A Rasko |
| E-mail(s) |
drasko@som.umaryland.edu
|
| Phone |
410 706 6774
|
| Organization name |
University of Maryland School of Medicine
|
| Department |
Istitute for Genome Sciences/Microbiology and Immunology
|
| Street address |
801 W. Baltimore Street, Room 619
|
| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21201 |
| Country |
USA |
| |
|
| Platforms (17)
|
| GPL18915 |
Illumina HiSeq 2500 (Acinetobacter baumannii 1000160) |
| GPL18916 |
Illumina HiSeq 2000 (Acinetobacter baumannii 1000160) |
| GPL18917 |
Illumina HiSeq 2500 (Acinetobacter baumannii 1207552) |
| GPL18918 |
Illumina HiSeq 2000 (Acinetobacter baumannii 1207552) |
| GPL18919 |
Illumina HiSeq 2500 (Acinetobacter baumannii 1428368) |
| GPL18920 |
Illumina HiSeq 2000 (Acinetobacter baumannii 1428368) |
| GPL18921 |
Illumina HiSeq 2000 (Acinetobacter baumannii 1457504) |
| GPL18922 |
Illumina HiSeq 2500 (Acinetobacter baumannii 1457504) |
| GPL18923 |
Illumina HiSeq 2500 (Acinetobacter baumannii 1564232) |
| GPL18924 |
Illumina HiSeq 2500 (Acinetobacter baumannii 1592897) |
| GPL18925 |
Illumina HiSeq 2000 (Acinetobacter baumannii 1592897) |
| GPL18926 |
Illumina HiSeq 2000 (Acinetobacter baumannii 34654) |
| GPL18927 |
Illumina HiSeq 2500 (Acinetobacter baumannii 34654) |
| GPL18928 |
Illumina HiSeq 2500 (Acinetobacter baumannii 478810) |
| GPL18929 |
Illumina HiSeq 2000 (Acinetobacter baumannii 478810) |
| GPL18930 |
Illumina HiSeq 2000 (Acinetobacter baumannii 983759) |
| GPL18931 |
Illumina HiSeq 2500 (Acinetobacter baumannii 983759) |
|
| Samples (180)
|
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE56218 |
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 34654) |
| GSE56219 |
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 478810) |
| GSE56220 |
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 983759) |
| GSE56221 |
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 1000160) |
| GSE56222 |
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 1207552) |
| GSE56223 |
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 1428368) |
| GSE56224 |
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 1457504) |
| GSE56225 |
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 1564232) |
| GSE56226 |
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 1592897) |
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