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Series GSE56478 Query DataSets for GSE56478
Status Public on Mar 23, 2015
Title Effect of obesity on liver immune response to inflammatory stimuli in a diet-obesity model of zebrafish (Danio rerio)
Organism Danio rerio
Experiment type Expression profiling by array
Summary We used a Diet-Induced-Obesity approach using the zebrafish (Danio rerio) based on overfeeding to analyze the liver transcriptomic modulation in the disease and to determine how the obesity affects the immune response against an acute inflammatory stimulus as the lipopolysacharide (LPS). Overfed zebrafish were obese and showed signs of steatosis in their liver. Furthermore, the gene modulation profile resembled to that observed in humans. After the inflammatory stimulus, there was a clear differential immune response in normal and overfed fish. In normal fish, the response to LPS reported a typical host defensive reaction comparable to the one occurring in stimulated mammals whereas there was not any significantly modulated gene when comparing the expression of liver from LPS-stimulated with non-stimulated obese zebrafish.
 
Overall design Healthy fish were fed two times a day, one with Artemia and the other with standard fish chow while obese fish were fed fish chow two more times a day during 8 months. 10 μg of pure LPS (Sigma) or PBS was intraperitoneally injected and livers were sampled and pooled at 3 hours post injection.
 
Contributor(s) Forn-Cuní G, Varela M, Fernández-Rodríguez CM, Figueras A, Novoa B
Citation(s) 25371540
Submission date Apr 02, 2014
Last update date Dec 17, 2015
Contact name Gabriel Forn-Cuní
Organization name Universiteit Leiden
Department IBL-ASH-CO
Street address Einsteinweg 55
City Leiden
State/province Zuid-Holland
ZIP/Postal code 2313JA
Country Netherlands
 
Platforms (1)
GPL14664 Agilent-026437 D. rerio (Zebrafish) Oligo Microarray V3 (Probe Name version)
Samples (16)
GSM1362164 Healthy_Zebrafish_Liver_rep1
GSM1362165 Healthy_Zebrafish_Liver_rep2
GSM1362166 Healthy_Zebrafish_Liver_rep3
Relations
BioProject PRJNA243389

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE56478_RAW.tar 35.4 Mb (http)(custom) TAR (of TXT)
GSE56478_gene_level_analysis.txt.gz 1.6 Mb (ftp)(http) TXT
GSE56478_readme.txt 1.2 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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