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| Status |
Public on Apr 21, 2014 |
| Title |
Global variation of gene expression induced by constitutive activation of the NIK receptor in Arabidopsis |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Arabidopsis was transformed with the NIK receptor or the mutant T474D NIK receptor and infected with CaLCuV. The global variation of gene expression was analysed by RNA-seq at 10 days post inoculation and 20 days post inoculation and differential gene expression was determinated in comparison with mock inoculated Arabidopsis lines.
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| |
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| Overall design |
Pairwise comparison between mock inoculated and infected genotypes (WT,NIK-expressing lines and T474D-expressing lines) at 10 dpi and 20 dpi
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| |
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| Contributor(s) |
Santos AA, Brustolini OJ, Fontes EP |
| Citation(s) |
25707794 |
| |
| Submission date |
Apr 18, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Otavio Jose Bernardes Brustolini |
| E-mail(s) |
otaviojbbrustolini@gmail.com
|
| Phone |
+553138992969
|
| Organization name |
Universidade Federal de Viçosa
|
| Department |
Bioquimica e Biologia Molecular
|
| Lab |
Biologica Molecular de Plantas
|
| Street address |
Av. PHRolfs, S/N
|
| City |
Viçosa |
| State/province |
MG |
| ZIP/Postal code |
36570000 |
| Country |
Brazil |
| |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (20)
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| Relations |
| BioProject |
PRJNA244971 |
| SRA |
SRP041308 |
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