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Series GSE58433 Query DataSets for GSE58433
Status Public on Jun 13, 2014
Title The microbial functional structure along an elevation gradient of the Shennongjia Mountain as characterized by GeoChip
Platform organisms Bacteria; Archaea; Eukaryota; Viruses
Sample organism uncultured soil microorganism
Experiment type Other
Summary Known as “The Oriental Botanic Garden” and the natural gene bank of biological species, Shennongjia is one of the most biologically diverse areas in China and a member of UNESCO's World Network of Biosphere Reserves. The macro-organism resources of shennongjia have been deeply explored. However, the microbial community structure was scarcely detected. In this study, we aim to detedect the microbial community along six sites of Shennonajia Mountain and explore the major controlling factor in shaping microbial community with a microarray-based metagenomics tool named GeoChip 4.2.
 
Overall design Seventy-three samples were collected from six sites along the Shennongjia Mountain, with 5-15 replicates in every site
 
Contributor(s) Yang Y, Zhang Y, Ding J
Citation(s) 25613225
Submission date Jun 12, 2014
Last update date Apr 16, 2015
Contact name Junjun Ding
Organization name Tsinghua University
Street address Haidian
City Beijing
ZIP/Postal code 100084
Country China
 
Platforms (1)
GPL18787 GeoChip 4.2
Samples (73)
GSM1410895 JC1
GSM1410896 JC2
GSM1410897 JC3
Relations
BioProject PRJNA252604

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58433_Shennongjia-GeoChip_data.txt.gz 17.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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