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Series GSE58857 Query DataSets for GSE58857
Status Public on Apr 06, 2015
Title A transcriptional map following the developmental trajectory of the Arabidopsis stomatal lineage
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Expression profiling by high throughput sequencing
Summary Developmental transitions can be described in terms of morphology and individual genes expression patterns, but also in terms of global transcriptional and epigenetic changes. Most of the large-scale studies of such transitions, however, have only been possible in synchronized cell culture systems. Here we generate a cell type specific transcriptome of an adult stem-cell lineage in the Arabidopsis leaf using RNA sequencing and microarrays. RNA profiles of stomatal entry, commitment, and differentiating cells, as well as of mature stomata and the entire aerial epidermis give a comprehensive view of the developmental progression.
 
Overall design Refer to individual Series
 
Citation(s) 25850675
Submission date Jun 26, 2014
Last update date May 15, 2019
Contact name Dominique C Bergmann
Organization name Stanford University
Department Biology Department
Lab Bergmann Lab
Street address 371 Serra Mall
City Stanford
State/province CA
ZIP/Postal code 94305-5020
Country USA
 
Platforms (2)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (26)
GSM1420938 ATH1 - ML1p::YFP-RCI2A (ML1Y) - replicate 1
GSM1420939 ATH1 - ML1p::YFP-RCI2A (ML1Y) - replicate 2
GSM1420940 ATH1 - ML1p::YFP-RCI2A (ML1Y) - replicate 3
This SuperSeries is composed of the following SubSeries:
GSE58855 A transcriptional map following the developmental trajectory of the Arabidopsis stomatal lineage
GSE58856 A transcriptional map following the developmental trajectory of the Arabidopsis stomatal lineage
Relations
BioProject PRJNA253729

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58857_RAW.tar 23.9 Mb (http)(custom) TAR (of CEL)
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