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| Status |
Public on Jul 01, 2017 |
| Title |
Small RNA expression pattern in multiple inbred lines and their hybrids of maize embryo |
| Organism |
Zea mays |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
To investigate whether small RNAs (sRNAs) participate in the regulation of heterosis, we profiled the sRNA expression patterns in the germ seeds of five inbred lines and theirs three F1 hybrids using high-throughput sequencing technology.
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| Overall design |
In this study, three hybrid varieties of maize, which were elite hybrids and widely cultivated in China that exhibited high heterosis for grain yield, and theirs five parental inbred lines were utilized. The relationship of these varieties is as followed: Chang 7-2 (Paternal, P), Zheng 58 (Maternal, M), and Zhengdan 958 (Hybrid, H); Chang 7-2 (P), 9058 (M), and Lingdan 20 (H); 87-1 (P), Zong 3 (M), and Yuyu22 (H). Small RNA profile of eight maize varieties are generated by deep sequencing.
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| Contributor(s) |
Liu Y, Wang X, Chen H |
| Citation missing |
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| Submission date |
Jul 06, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Yong-Xin Liu |
| E-mail(s) |
yxliu@genetics.ac.cn
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| Organization name |
Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
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| Department |
State Key Laboratory of Plant Genomics
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| Lab |
Yang Bai’s lab
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| Street address |
No.1 Beichenxi Road, Chaoyang District
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| City |
Beijing |
| ZIP/Postal code |
100101 |
| Country |
China |
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| Platforms (2) |
| GPL9141 |
Illumina Genome Analyzer (Zea mays) |
| GPL9361 |
Illumina Genome Analyzer II (Zea mays) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA254421 |
| SRA |
SRP044085 |
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