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Series GSE60273 Query DataSets for GSE60273
Status Public on Aug 12, 2015
Title Interaction between TBP and condensing drives the organization and faithful segregation of mitotic chromosomes
Organism Schizosaccharomyces pombe
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Genome/chromosome organization is highly ordered and controls nuclear events. Here, we show that the TATA box-binding protein (TBP) interacts with the Cnd2 kleisin subunit of condensin to mediate interphase and mitotic chromosome organization in fission yeast. TBP recruits condensin onto RNA polymerase III-transcribed (Pol III) genes and highly transcribed Pol II genes; condensin in turn associates these genes with centromeres. Inhibition of the Cnd2-TBP interaction disrupts condensin localization across the genome and the proper assembly of mitotic chromosomes, leading to severe defects in chromosome segregation and eventually causing cellular lethality. We propose that the Cnd2-TBP interaction coordinates transcription with chromosomal architecture by linking dispersed gene loci with centromeres. This chromosome arrangement can contribute to the efficient transmission of physical force at the kinetochore to chromosomal arms, thereby supporting the fidelity of chromosome segregation.
 
Overall design Genome-wide distributions of condensin and Pol III factors in fission yeast.
 
Contributor(s) Osamu I, Hideki T, Ken-ichi N
Citation(s) 26257282
Submission date Aug 08, 2014
Last update date May 15, 2019
Contact name Hideki Tanizawa
E-mail(s) hidekit@uoregon.edu
Organization name University of Oregon
Department Institute of Molecular Biology
Street address 1370 Franklin Blvd
City Eugene
State/province OR
ZIP/Postal code 97403
Country USA
 
Platforms (2)
GPL9453 Illumina Genome Analyzer II (Schizosaccharomyces pombe)
GPL13988 Illumina HiSeq 2000 (Schizosaccharomyces pombe)
Samples (13)
GSM1468956 Tbp1-Myc ChIP-seq
GSM1468957 no-tag Myc for Tbp1 ChIP-seq
GSM1468958 Rpc25-Myc ChIP-seq
Relations
BioProject PRJNA257894
SRA SRP045385

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Supplementary file Size Download File type/resource
GSE60273_RAW.tar 23.2 Mb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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