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Series GSE6094 Query DataSets for GSE6094
Status Public on Jul 21, 2008
Title Clostridium acetobutylicum ATCC 824 time course with Agilent Arrays
Platform organism Clostridium acetobutylicum ATCC 824
Sample organism Clostridium acetobutylicum
Experiment type Expression profiling by array
Summary Using our newly designed C. acetobutylicum arrays we analyzed the mRNA changes during a time course experiment (up to 66 h) paying special attention on the study of the late timepoints.
Keywords: time course
 
Overall design Samples were taken from a Bioflow II reactor at 6, 7, 8, 9, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 44, 48, 54, 58, and 66 hrs after bioreactor inoculation. Two slides per timepoint were hybridized on a dye swap configuration. The control mRNA was generated by combining samples taken at 8, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 44, 48, 54, 58, and 66 hrs after bioreactor inoculation. For timepoints 6, 8, 14, 32, 38, 66 our internal quality control check suggested a larger than normal variation of the intensities in the control channel and a third slide was hybridized. The discarded slides are GSM141189, GSM141203, GSM141222, GSM141229 and GSM141242.
 
Contributor(s) Cheng N, Jones SW, Sillers R, Paredes CJ, Papoutsakis ET
Citation(s) 18631379
Submission date Oct 20, 2006
Last update date Mar 16, 2012
Contact name Eleftherios Terry Papoutsakis
E-mail(s) papoutsakis@dbi.udel.edu
Organization name University of Delaware
Department Chemical Engineering
Street address 15 Innovation Way
City Newark
State/province DE
ZIP/Postal code 19711
Country USA
 
Platforms (1)
GPL4412 C. acetobutylicum ATCC824 22K Transcriptional array v2
Samples (56)
GSM141187 Clostridium acetobutylicum ATCC 824 time course (Hour 06 S1)
GSM141188 Clostridium acetobutylicum ATCC 824 time course (Hour 06 S2)
GSM141189 Clostridium acetobutylicum ATCC 824 time course (Hour 06 S3 Discarded)
Relations
BioProject PRJNA97653

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE6094_RAW.tar 365.6 Mb (http)(custom) TAR (of TXT)

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