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| Status |
Public on Sep 12, 2014 |
| Title |
GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils |
| Platform organism |
Bacteria |
| Sample organism |
uncultured bacterium |
| Experiment type |
Genome variation profiling by array
|
| Summary |
Microbial communities in the rhizosphere make significant contributions to crop health and nutrient cycling. However, their ability to perform important biogeochemical processes remains uncharacterized.
Important functional genes, which characterize the rhizosphere microbial community, were identified to understand metabolic capabilities in the maize rhizosphere using GeoChip 3.0-based functional gene array method.
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| Overall design |
Triplicate samples were taken for both rhizosphere and bulk soil, in which each individual sample was a pool of four plants or soil cores. To determine the abundance of functional genes in the rhizosphere and bulk soils, GeoChip 3.0 was used.
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| Contributor(s) |
Li X, Rui J, Xiong J, Li J, He Z, Zhou J, Yannarell AC, Mackie RI |
| Citation(s) |
25383887 |
| |
| Submission date |
Sep 11, 2014 |
| Last update date |
Dec 16, 2014 |
| Contact name |
Junpeng Rui |
| E-mail(s) |
ruijp@cib.ac.cn
|
| Organization name |
Chengdu Institute of Biology, Chinese Academy of Sciences
|
| Street address |
No. 9 Section 4, Renmin Nan Road
|
| City |
Chengdu |
| State/province |
Sichuan |
| ZIP/Postal code |
610041 |
| Country |
China |
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| Platforms (1) |
| GPL19187 |
GeoChip 3.0 for Bacteria, Archaea, Eukaryota and Viruses |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA260807 |
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