|
| Status |
Public on Sep 13, 2015 |
| Title |
Pol-IV dependent transcripts in Arabidopsis |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Other
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
small RNA, PATH and mRNA libraries were made to characterize Col and various small RNA biogenesis mutants.
|
| |
|
| Overall design |
Genome-wide RNA profiling was done by Illumina TruSeq sample preparation kits followed by high-throughput sequencing with Illumina HiSeq 2500 platform.
|
| |
|
| Contributor(s) |
Zhai J, Jacobsen S |
| Citation(s) |
26451488 |
| |
| Submission date |
Sep 15, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Steve Jacobsen |
| Organization name |
University of California, Los Angeles
|
| Department |
Department of Molecular, Cell and Developmental Biology
|
| Street address |
4045 Terasaki Life Sciences Building
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
|
| Samples (42)
|
|
| Relations |
| BioProject |
PRJNA261075 |
| SRA |
SRP047143 |
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