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Series GSE61439 Query DataSets for GSE61439
Status Public on Sep 13, 2015
Title Pol-IV dependent transcripts in Arabidopsis
Organism Arabidopsis thaliana
Experiment type Non-coding RNA profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary small RNA, PATH and mRNA libraries were made to characterize Col and various small RNA biogenesis mutants.
Overall design Genome-wide RNA profiling was done by Illumina TruSeq sample preparation kits followed by high-throughput sequencing with Illumina HiSeq 2500 platform. 
Contributor(s) Zhai J, Jacobsen S
Citation(s) 26451488
Submission date Sep 15, 2014
Last update date May 15, 2019
Contact name Steve Jacobsen
Organization name University of California, Los Angeles
Department Department of Molecular, Cell and Developmental Biology
Street address 4045 Terasaki Life Sciences Building
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (42)
GSM1504514 29_mRNA-Col
GSM1668883 1_PATH_Col_#1
GSM1668884 2_PATH_dcl2/3/4_#1
BioProject PRJNA261075
SRA SRP047143

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE61439_AGO4_RIP_GEO.xlsx 35.9 Kb (ftp)(http) XLSX
GSE61439_P4RNA_siRNA_and_mRNA_abundance_at_Pol-IV_loci.xlsx 340.9 Kb (ftp)(http) XLSX
GSE61439_RAW.tar 872.2 Mb (http)(custom) TAR (of TXT, WIG)
GSE61439_Summary_of_libraries.xlsx 13.0 Kb (ftp)(http) XLSX
GSE61439_nrpb2_sRNA_GEO.xlsx 15.2 Kb (ftp)(http) XLSX
GSE61439_top200mRNA_Pol2ChIP_GEO.pdf 191.9 Kb (ftp)(http) PDF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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