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Series GSE61896 Query DataSets for GSE61896
Status Public on Oct 15, 2015
Title Transcript levels in CIRCADIAN CLOCK ASSOCIATED 1-overexpressing (CCA1-ox) Arabidopsis thaliana over a 24-hour diurnal cycle
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary Circadian control of gene expression has been established in plants at the transcriptional level, but relatively little is known about circadian control of translation. We used polysome profiling to characterize regulation of transcription and translation over a 24-hour diurnal cycle in Arabidopsis, both in wild type and in plants with a disrupted clock due to constitutive overexpression of the CIRCADIAN CLOCK ASSOCIATED 1 gene (CCA1-ox, AGI AT2G46830).
 
Overall design 10 day-old wild type and CCA1-ox (described in Cell. 1998 Jun 26;93(7):1207-17) Arabidopsis seedlings were harvested at 6am (Zeitgeber time ZT0), 12pm (ZT6), 6pm (ZT12), and 12am (ZT18), with 3 replicates for each time and genotype.
 
Contributor(s) von Arnim A, Ernest B, Missra A
Citation(s) 26392078
Submission date Sep 30, 2014
Last update date Jun 12, 2017
Contact name Albrecht G von Arnim
E-mail(s) vonarnim@utk.edu
Phone 1-865-974-6206
Organization name The University of Tennessee
Department Biochemistry, Cellular and Molecular Biology
Lab von Arnim Lab
Street address M407 Walters Life Science Building
City Knoxville
State/province TN
ZIP/Postal code 37996
Country USA
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (12)
GSM1516670 CCA1-ox, 6am, total RNA, replicate 1
GSM1516671 CCA1-ox, 12pm, total RNA, replicate 1
GSM1516672 CCA1-ox, 6pm, total RNA, replicate 1
This SubSeries is part of SuperSeries:
GSE61899 Polysome profiling in wild type and CIRCADIAN CLOCK ASSOCIATED 1-overexpressing (CCA1-ox) Arabidopsis thaliana over a 24-hour diurnal cycle
Relations
BioProject PRJNA262638

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE61896_RAW.tar 24.3 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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