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Series GSE61925 Query DataSets for GSE61925
Status Public on Oct 01, 2014
Title Pathogenic mechanisms of Pseudomonas aeruginosa wound infection in response to murine fascia
Organism Pseudomonas aeruginosa
Experiment type Expression profiling by array
Summary Wound infections are traditionally thought to occur when microbial burden exceeds the innate clearance capacity of host immune system. Here we introduce the idea that the wound environment itself plays a significant contributory role to wound infection.
We developed a clinically relevant murine model of soft tissue infection to explore the role of activation of microbial virulence in response to tissue factors as a mechanism by which pathogenic bacteria cause wound infections.
Mice underwent abdominal skin incision and light muscle injury with a crushing forceps versus skin incision alone followed by topical inoculation of Pseudomonas aeruginosa.
Pseudomonas aeruginosa whole genome transcriptional profiling demonstrated that fascia induced the activation of multiple genes responsible for the synthesis of the iron scavenging protein pyochelin.
 
Overall design Ex-vivo murine fascia homogenates were prepared and Pseudomonas aeruginosa MPAO1 was incubated with an inoculum of the fascia homogenate solution.
Pseudomonas aeruginosa MPAO1 incubated under the same condtions without the homogenate was used as the control group. Three biological replicates in each group was used.
 
Contributor(s) Kim M, Christley S, Khodarev N, Fleming ID, Huang Y, Chang E, Zaborina O, Alverdy J
Citation(s) 25807409
Submission date Sep 30, 2014
Last update date Jul 06, 2016
Contact name John C Alverdy
E-mail(s) jalverdy@surgery.bsd.uchicago.edu
Organization name University of Chicago
Department Surgery
Street address 5841 South Maryland Avenue
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platforms (1)
GPL84 [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array
Samples (6)
GSM1517347 Fascia 1
GSM1517348 Fascia 2
GSM1517349 Fascia 3
Relations
BioProject PRJNA262687

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE61925_RAW.tar 3.3 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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