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Series GSE62010 Query DataSets for GSE62010
Status Public on May 03, 2015
Title A cross-comparison of technologies for the detection of microRNAs from FFPE samples of hepatoblastoma patients [sequencing]
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary This work highlights similarities and differences between three platforms (next-generation sequencing, microarray and NanoString) for detecting miRNAs and compares their strengths and weaknesses.
 
Overall design miRNA expression profiles were determined in 6 Hepatoblastoma FFPE samples using a next-generation sequencing platform.
 
Contributor(s) Chatterjee A, Leichter AL, Fan V, Tsai P, Purcell RV, Sullivan MJ, Eccles MR
Citation(s) 26039282, 26613016
Submission date Oct 02, 2014
Last update date May 15, 2019
Contact name Aniruddha Chatterjee
E-mail(s) aniruddha.chatterjee@otago.ac.nz
Phone +64-210701558
Organization name University of Otago
Department Pathology
Lab Epigenetics and Disease
Street address 270 Great king Street
City Dunedin
State/province Otago
ZIP/Postal code 9054
Country New Zealand
 
Platforms (1)
GPL15520 Illumina MiSeq (Homo sapiens)
Samples (6)
GSM1518393 S4A [sequencing]
GSM1518394 S4B [sequencing]
GSM1518395 S5A [sequencing]
This SubSeries is part of SuperSeries:
GSE62018 A cross-comparison of technologies for the detection of microRNAs from FFPE samples of hepatoblastoma patients
Relations
BioProject PRJNA262945
SRA SRP048606

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE62010_Read_count_per_miRNA.txt.gz 10.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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