|
| Status |
Public on May 07, 2008 |
| Title |
Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris |
| Organism |
Rhodopseudomonas palustris |
| Experiment type |
Expression profiling by array
|
| Summary |
To address the question of how photosynthetic bacterium Rhodopseudomonas palustris metabolize lignin derived compound p-coumarate, transcriptomics and quantitative proteomics were combined to characterize gene expression profiles at both the mRNA level and protein level in Rhodopseudomonas palustris grown with succinate, benzoate, and p-coumarate as the carbon source.
Keywords: Comparison of transcriptome profiles
|
| |
|
| Overall design |
Transcriptome profiles among Rhodopseudomonas palustris cells grown with succinate, benzoate, and p-coumarate as the carbon source were compared.
|
| |
|
| Contributor(s) |
Pan C, Oda Y, Pelletier DA, Zhang B, Lankford PK, Samatova NF, Harwood CS, Hettich RL |
| Citation(s) |
18156135 |
| |
| Submission date |
Nov 02, 2006 |
| Last update date |
Mar 16, 2012 |
| Contact name |
Yasuhiro Oda |
| E-mail(s) |
yasuhiro@uw.edu
|
| Organization name |
University of Washington
|
| Department |
Department of Microbiology
|
| Lab |
Harwood
|
| Street address |
Box 357242, 1705 N.E. Pacific Street, HSB K-354
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-7242 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL3954 |
Affymetrix Rhodopseudomonas palustris GeneChip 2 |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA97539 |
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