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GEO accession:
Series GSE63605
Query DataSets for GSE63605
Status
Public on May 07, 2015
Title
Endogenous tRNA-derived fragments suppress breast cancer progression via YBX1 displacement
Organism
Homo sapiens
Experiment type
Expression profiling by array
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
25957686
Submission date
Nov 24, 2014
Last update date
May 15, 2019
Contact name
Hani Goodarzi
Organization name
UCSF
Department
Biochemistry and Biophysics
Street address
600 16th St, GH S312D
City
San Francisco
State/province
CA
ZIP/Postal code
94158
Country
USA
Platforms (2)
GPL10558
Illumina HumanHT-12 V4.0 expression beadchip
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
Samples (102)
Less...
More...
GSM1552669
MDA-shYBX1-1
GSM1552670
MDA-shYBX1-2
GSM1552671
MDA-shCtrl-1
GSM1552672
MDA-shCtrl-2
GSM1552673
MDA-Hypoxia-shYBX1-1
GSM1552674
MDA-Hypoxia-shYBX1-2
GSM1552675
MDA-Hypoxia-shCtrl-1
GSM1552676
MDA-Hypoxia-shCtrl-2
GSM1552677
LM2-shYBX1-1
GSM1552678
LM2-shYBX1-2
GSM1552679
LM2-shCtrl-1
GSM1552680
LM2-shCtrl-2
GSM1552681
LM2-Hypoxia-shYBX1-1
GSM1552682
LM2-Hypoxia-shYBX1-2
GSM1552683
LM2-Hypoxia-shCtrl-1
GSM1552684
LM2-Hypoxia-shCtrl-2
GSM1552699
MDA-Hypoxia-shYBX1-LNA-1
GSM1552700
MDA-Hypoxia-shYBX1-LNA-2
GSM1552701
MDA-Hypoxia-shYBX1-Scr-1
GSM1552702
MDA-Hypoxia-shYBX1-Scr-2
GSM1552703
MDA-Hypoxia-shCtrl-LNA-1
GSM1552704
MDA-Hypoxia-shCtrl-LNA-2
GSM1552705
MDA-Hypoxia-shCtrl-Scr-1
GSM1552706
MDA-Hypoxia-shCtrl-Scr-2
GSM1552707
LNA-tRF-Glu1_shControl
GSM1552708
LNA-tRF-Asp1_shControl
GSM1552709
LNA-tRF-Gly1_shControl
GSM1552710
LNA-tRF-Tyr1_shControl
GSM1552711
LNA-tRF-Scr1_shControl
GSM1552712
LNA-tRF-Scr2_shControl
GSM1552713
LNA-tRF-Glu2_shControl
GSM1552714
LNA-tRF-Asp2_shControl
GSM1552715
LNA-tRF-Gly2_shControl
GSM1552716
LNA-tRF-Tyr2_shControl
GSM1552717
LNA-tRF-Scr3_shControl
GSM1552718
LNA-tRF-Scr4_shControl
GSM1552719
LNA-tRF-Glu1_shYBX1-1
GSM1552720
LNA-tRF-Asp1_shYBX1-1
GSM1552721
LNA-tRF-Gly1_shYBX1-1
GSM1552722
LNA-tRF-Tyr1_shYBX1-1
GSM1552723
LNA-tRF-Scr1_shYBX1-1
GSM1552724
LNA-tRF-Scr2_shYBX1-1
GSM1552725
LNA-tRF-Glu2_shYBX1-2
GSM1552726
LNA-tRF-Asp2_shYBX1-2
GSM1552727
LNA-tRF-Gly2_shYBX1-2
GSM1552728
LNA-tRF-Tyr2_shYBX1-2
GSM1552729
LNA-tRF-Scr3_shYBX1-2
GSM1552730
LNA-tRF-Scr4_shYBX1-2
GSM1552731
LNA-tRF-Asp1_shControl_0hr
GSM1552732
LNA-tRF-Asp2_shControl_0hr
GSM1552733
LNA-tRF-Asp3_shControl_0hr
GSM1552734
LNA-tRF-Glu1_shControl_0hr
GSM1552735
LNA-tRF-Glu2_shControl_0hr
GSM1552736
LNA-tRF-Glu3_shControl_0hr
GSM1552737
LNA-tRF-Gly1_shControl_0hr
GSM1552738
LNA-tRF-Gly2_shControl_0hr
GSM1552739
LNA-tRF-Gly3_shControl_0hr
GSM1552740
LNA-tRF-Tyr1_shControl_0hr
GSM1552741
LNA-tRF-Tyr2_shControl_0hr
GSM1552742
LNA-tRF-Tyr3_shControl_0hr
GSM1552743
LNA-tRF-Asp1_shControl_8hr
GSM1552744
LNA-tRF-Asp2_shControl_8hr
GSM1552745
LNA-tRF-Asp3_shControl_8hr
GSM1552746
LNA-tRF-Glu1_shControl_8hr
GSM1552747
LNA-tRF-Glu2_shControl_8hr
GSM1552748
LNA-tRF-Glu3_shControl_8hr
GSM1552749
LNA-tRF-Gly1_shControl_8hr
GSM1552750
LNA-tRF-Gly2_shControl_8hr
GSM1552751
LNA-tRF-Gly3_shControl_8hr
GSM1552752
LNA-tRF-Tyr1_shControl_8hr
GSM1552753
LNA-tRF-Tyr2_shControl_8hr
GSM1552754
LNA-tRF-Tyr3_shControl_8hr
GSM1552755
LNA-tRF-Asp1_shYBX1_0hr
GSM1552756
LNA-tRF-Asp2_shYBX1_0hr
GSM1552757
LNA-tRF-Asp3_shYBX1_0hr
GSM1552758
LNA-tRF-Glu1_shYBX1_0hr
GSM1552759
LNA-tRF-Glu2_shYBX1_0hr
GSM1552760
LNA-tRF-Glu3_shYBX1_0hr
GSM1552761
LNA-tRF-Gly1_shYBX1_0hr
GSM1552762
LNA-tRF-Gly2_shYBX1_0hr
GSM1552763
LNA-tRF-Gly3_shYBX1_0hr
GSM1552764
LNA-tRF-Tyr1_shYBX1_0hr
GSM1552765
LNA-tRF-Tyr2_shYBX1_0hr
GSM1552766
LNA-tRF-Tyr3_shYBX1_0hr
GSM1552767
LNA-tRF-Asp1_shYBX1_8hr
GSM1552768
LNA-tRF-Asp2_shYBX1_8hr
GSM1552769
LNA-tRF-Asp3_shYBX1_8hr
GSM1552770
LNA-tRF-Glu1_shYBX1_8hr
GSM1552771
LNA-tRF-Glu2_shYBX1_8hr
GSM1552772
LNA-tRF-Glu3_shYBX1_8hr
GSM1552773
LNA-tRF-Gly1_shYBX1_8hr
GSM1552774
LNA-tRF-Gly2_shYBX1_8hr
GSM1552775
LNA-tRF-Gly3_shYBX1_8hr
GSM1552776
LNA-tRF-Tyr1_shYBX1_8hr
GSM1552777
LNA-tRF-Tyr2_shYBX1_8hr
GSM1552778
LNA-tRF-Tyr3_shYBX1_8hr
GSM1553385
YBX1-LMW-CLIP-r1
GSM1553386
YBX1-LMW-CLIP-r2
GSM1553387
YBX1-LMW-CLIP-r3
GSM1553437
YBX1_CLIP_r1
GSM1553438
YBX1_CLIP_r2
GSM1553439
YBX1_CLIP_r3
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE63562
YBX1-dependent hypoxia-induced modulation of gene expression
GSE63563
YBX1-dependent LNA-tRF-mediated modulation of gene expression under hypoxia
GSE63564
YBX1-dependent LNA-tRF-mediated modulation of gene expression
GSE63565
YBX1-dependent LNA-tRF-mediated modulation of transcript stability
GSE63597
YBX1 small-RNA HITS-CLIP
GSE63604
YBX1 HITS-CLIP
Relations
BioProject
PRJNA268389
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE63605_RAW.tar
26.2 Mb
(http)
(custom)
TAR
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