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Series GSE63685 Query DataSets for GSE63685
Status Public on Mar 28, 2017
Title Clinical Utility of Patient Derived Xenografts to Determine Biomarkers of Prognosis and Map Resistance Pathways in EGFR-Mutant Lung Adenocarcinoma
Platform organism Homo sapiens
Sample organism Mus musculus
Experiment type Expression profiling by array
Summary PURPOSE: Although epidermal growth factor receptor (EGFR) mutated adenocarcinomas initially have very high response rates to EGFR tyrosine kinase inhibitors (TKIs), most atients eventually develop resistance. Patient derived xenografts (PDXs) are considered preferred preclinical models to study the biology of patient tumors. EGFR-mutant PDX models may be valuable tools to study the biology of these tumors and to elucidate mechanisms of resistance to EGFR-targeted therapies.
METHODS: Surgically resected early stage non-small cell lung carcinoma (NSCLC) tumors were implanted into non-obese diabetic severe combined immune deficient (NODSCID) mice. EGFR TKI treatment was initiated at tumor volumes of 150 mm3. Gene expression analysis was performed using microarray platform.
RESULTS: Of 33 lung adenocarcinomas with EGFR activating mutations, only 6 engrafted 18%) and could be propagated beyond passage one. Engraftment was associated with upregulation of genes involved in mitotic checkpoint and cell proliferation. A differentially expressed gene set between engrafting and non-engrafting patients could identify EGFRmutant patients with significantly different prognoses in The Cancer Genome Atlas (TCGA) Lung Adenocarcinoma datasets. The PDXs included models with variable sensitivity to first- and second-generation EGFR TKIs and the monoclonal antibody cetuximab. All EGFR-mutant NSCLC PDXs studied closely recapitulated their corresponding patient tumor phenotype and clinical course, including response pattern to EGFR TKIs.
CONCLUSIONS: PDX models closely recapitulate primary tumor biology and clinical outcome. They may serve as important laboratory models to investigate mechanisms of resistance to targeted therapies, and for preclinical testing of novel treatment strategies.
 
Overall design Total RNAs from primary EGFR mutant tumor were amplified by DASL kit and hybridized to Illumina HT12v4 chip
 
Contributor(s) Tsao M, Zhu C
Citation(s) 26124487
Submission date Nov 26, 2014
Last update date Dec 22, 2017
Contact name Ming Tsao
E-mail(s) ming.tsao@uhn.on.ca
Phone 4169464501
Organization name University of Toronto
Department Ontario Cancer Institute
Lab Applied Molecular Oncology
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G2M9
Country Canada
 
Platforms (1)
GPL14951 Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip
Samples (25)
GSM1555186 PHLC5
GSM1555187 PHLC160
GSM1555188 PHLC14
Relations
BioProject PRJNA268686

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63685_non_normalized.txt.gz 6.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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