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Series GSE64142 Query DataSets for GSE64142
Status Public on Feb 18, 2015
Title Genome-wide profiling of miRNA expression dynamics in monocyte-derived dendritic cells following infection with a panel of intra-cellular bacteria
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We report the application of RNA sequencing to assess the expression dynamics of miRNAs and their isoforms over time upon infection with a panel of six intracellular bacteria (Mycobacterium tuberculosis H37Rv, Mycobacterium tuberculosis Beijing strain GC1237, Mycobacterium bovis BCG, Salmonella typhimurium strain Keller, Staphloccocus epidermidis and Yersinia pseudotuberculosis)
 
Overall design Study of miRNA expression dynamics of monocyte-derived dendritic cells upon bacterial infection using RNA sequencing
 
Contributor(s) Siddle KJ, Quintana-Murci L
Citation(s) 25793259, 26076462
Submission date Dec 12, 2014
Last update date May 15, 2019
Contact name Katherine Siddle
Organization name Institut Pasteur
Street address 28 rue du Dr Roux
City Paris
ZIP/Postal code 75015
Country France
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (116)
GSM1565141 GPA-105_HumanDC_smallRNA_RNAseq
GSM1565142 GPA-126_HumanDC_smallRNA_RNAseq
GSM1565143 GPA-147_HumanDC_smallRNA_RNAseq
Relations
BioProject PRJNA270244
SRA SRP051119

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE64142_Scaled_miRNA_counts.txt.gz 885.4 Kb (ftp)(http) TXT
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Processed data are available on Series record
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