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Series GSE65209 Query DataSets for GSE65209
Status Public on Feb 22, 2016
Title Elucidating the Linezolid response of Staphylococcus aureus USA300 by a holistic study
Platform organisms Staphylococcus aureus; Staphylococcus aureus subsp. aureus NCTC 8325; Staphylococcus aureus subsp. aureus COL; Staphylococcus aureus subsp. aureus Mu50; Staphylococcus aureus subsp. aureus N315; Staphylococcus aureus subsp. aureus MW2; Staphylococcus aureus subsp. aureus MRSA252; Staphylococcus aureus subsp. aureus MSSA476; Staphylococcus aureus subsp. aureus USA300
Sample organism Staphylococcus aureus
Experiment type Expression profiling by array
Summary The translation inhibitor Linezolid is an important antibiotic of last resort against multiresistant gram-positive pathogens including MRSA. Linezolid is reported to specifically inhibit extracellular virulence factors, but the molecular cause is unknown. To elucidate the physiological response of S. aureus to Linezolid in general and the possible inhibition of virulence factors specifically we performed a holistic study. We added Linezolid to logarithmically growing S. aureus cells and analyzed the Linezolid stress response with transcriptomics, quantitative proteomics and microscopy experiments.
As previously observed in studies on other translation inhibitors S. aureus is adapting its protein biosynthesis machinery to the reduced translation efficiency, for example the synthesis of ribosomal proteins is induced. But we also observed unexpected results like a general decline in the amount of extracellular and membrane proteins. In addition cell shape and size changed after Linezolid stress and cell division was diminished. Finally, the chromosome condensed after LZD stress and lost contact to the membrane.
 
Overall design sample versus pool design (pool = mixture of equal amounts of all RNA samples analyzed), all RNA samples were isolated as biological triplicates
 
Contributor(s) Bonn F, Schaffer M, Mäder U, Völker U, Becher D
Citation(s) 26996810
Submission date Jan 22, 2015
Last update date Feb 27, 2019
Contact name Florian Bonn
E-mail(s) florian.bonn@uni-greifswald.de
Organization name University of Greifswald
Department Institute for Microbiology
Lab Professor Becher
Street address Jahnstraße 15
City Greifswald
ZIP/Postal code 17489
Country Germany
 
Platforms (1)
GPL7137 Agilent-017903 Staphylococcus aureus V5 Bis 15K (basic)
Samples (15)
GSM1589603 Pool x control log 1
GSM1589604 Pool x control log 2
GSM1589605 Pool x control log 3
Relations
BioProject PRJNA273405

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65209_Normalized_signal_with_featurenumbers.txt.gz 1.3 Mb (ftp)(http) TXT
GSE65209_Processed_ratios_LocusTag.txt.gz 187.2 Kb (ftp)(http) TXT
GSE65209_RAW.tar 46.3 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data are available on Series record

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