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Series GSE6582 Query DataSets for GSE6582
Status Public on Dec 22, 2006
Title Candida glabrata transcription profile when grown under Niacin starvation or in human urine
Organism Nakaseomyces glabratus
Experiment type Expression profiling by array
Summary The transcription profile of Candida glabrata grown under two different Niacin limitation conditions were determined. Condition 1 is comparing log phase C. glabrata cells (O.D. 0.5-0.6) grown in synthetic medium containing 0.016 uM versus 3.25 uM nicotinic acid (NA), a common form of Niacin. The NA concentration of 3.25 uM is the standard concentration in synthetic complete (SC) medium. Condition 2 is comparing log phase C. glabrata cells (O.D. 0.4-0.6) grown in 3 individual human urine samples (supplemented with 2% glucose) versus in SC medium.
Keywords: transcriptional profiling by microarray
 
Overall design GSM151863, GSM151869 are dye-swap experiment #1 and GSM151880, GSM151881 are dye-swap experiment #2 for Niacin limitation condition 1.
GSM151934, GSM152116 are dye-swap experiment #1, GSM152118, GSM152119 are dye-swap experiment #2 and GSM152130, GSM152131 are dye-swap experiment #3 for Niacin limitation condition 2.
 
Contributor(s) Cormack B, Ma B
Citation(s) 19451228
Submission date Dec 20, 2006
Last update date Mar 16, 2012
Contact name Brendan Cormack
E-mail(s) bcormack@jhmi.edu
Phone 410-955-3651
Organization name Johns Hopkins Univ. School of Medicine
Department Molecular Biology & Genetics
Street address Hunterian Building 617, 725 N. Wolfe St.
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platforms (1)
GPL3922 Candida glabrata whole genome oligonucleotide array (70 mers)
Samples (10)
GSM151863 Candida glabrata transcription profile in response to Niacin limitation (Exp.1-1)
GSM151869 Candida glabrata transcription profile in response to Niacin limitation (Exp.1-2)
GSM151880 Candida glabrata transcription profile in response to Niacin limitation (Exp.2-1)
Relations
BioProject PRJNA98911

Table 1: Transcripts upregulated more than 2 fold when grown in human urine header descriptions
Oligo ID ID of each oligonucleotide used on microarray
ORF Name Name of open reading frame corresponding to each oligonucleotide
Urine:SC Ratio of transcript level in cells grown in human urine versus in SC medium
[0.016:3.2] uM NA Ratio of transcript level in NA-starved cells (0.016 uM NA) versus non-starved cells (3.25 uM NA)
S.cerevisiae homolog1 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
S.cerevisiae homolog2 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
Biological process in S.c. The biological process involving the corresponding S. cerevisiae gene product
Function in S.c. The biological function of the corresponding S. cerevisiae gene product

Data table
Oligo ID ORF Name Urine:SC [0.016:3.2] uM NA S.cerevisiae homolog1 S.cerevisiae homolog2 Biological process in S.c. Function in S.c.
6031.1-997-1066 CAGL0M14113g 183.8 252.7 YOR192c YOR192c transport high affinity transporter of nicotinamide riboside
9526.1-1357-1426 CAGL0L13354g 173.1 312.3 YOR192c YOR192c transport high affinity transporter of nicotinamide riboside
7171.1-5296-5365 CAGL0M05533g 21.5 3.6 YBR208C DUR1,2 allantoin catabolism* allophanate hydrolase activity*
4933.1-2384-2453 CAGL0D05280g 14.7 2.3 YFR030W MET10 sulfate assimilation sulfite reductase (NADPH) activity
5413.1-3980-4049 CAGL0M00374g 13.4 2.1 YJR137C ECM17 cell wall organization and biogenesis* sulfite reductase (NADPH) activity
734.1-1256-1324 CAGL0B03839g 12.3 1.1 YJR010W MET3 methionine metabolism* sulfate adenylyltransferase (ATP) activity
850.1-1075-1143 CAGL0B02475g 10.5 3.9 YML123C PHO84 phosphate transport* manganese ion transporter activity*
3204.1-45-114 CAGL0K10164g 9.4 15.2 N/A N/A
611.1-1061-1130 CAGL0F08371g 9.3 13.3 YGR260W TNA1 nicotinamide mononucleotide transport nicotinamide mononucleotide permease activity
6847.1-3-72 CAGL0J04202g 9.2 52.6 YFL014W HSP12 response to oxidative stress* molecular function unknown
8449.1-555-624 CAGL0L02321g 8.2 1.2 YKL001C MET14 methionine metabolism* adenylylsulfate kinase activity
8611.1-2447-2516 CAGL0L12342g 7.1 1.6 YLR092W SUL2 sulfate transport sulfate transporter activity
8571.1-1260-1329 CAGL0D06402g 5.9 2.4 YLR303W MET17 methionine metabolism* cysteine synthase activity*
223.1-592-661 CAGL0H07469g 5.6 23.3 YBR157C ICS2 biological process unknown molecular function unknown
2315.1-1226-1296 CAGL0J06402g 5.3 8.6 YDL131W LYS21 lysine biosynthesis via aminoadipic acid homocitrate synthase activity
2917.1-171-239 CAGL0J11550g 5.2 14.6 YNL195C YNL195C biological process unknown molecular function unknown
3819.1-1218-1287 CAGL0G01903g 4.8 1.7 YKR069W MET1 sulfate assimilation* uroporphyrin-III C-methyltransferase activity
5913.1-113-181 CAGL0I04444g 4.7 15.9 YAR015W ADE1 'de novo' IMP biosynthesis* phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
2451.1-1412-1481 CAGL0E03630g 4.6 11.6 YHL024W RIM4 meiosis* RNA binding
4353.1-211-280 CAGL0I08503g 4.6 1.2 YPR167C MET16 methionine metabolism* phosphoadenylyl-sulfate reductase (thioredoxin) activity

Total number of rows: 87

Table truncated, full table size 9 Kbytes.




Table 2: Transcripts down-regulated more than 2 fold when grown in human urine header descriptions
Oligo ID ID of each oligonucleotide used on microarray
ORF Name Name of open reading frame corresponding to each oligonucleotide
Urine:SC Ratio of transcript level in cells grown in human urine versus in SC medium
[0.016:3.2] uM NA Ratio of transcript level in NA-starved cells (0.016 uM NA) versus non-starved cells (3.25 uM NA)
S.cerevisiae homolog1 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
S.cerevisiae homolog2 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
Biological process in S.c. The biological process involving the corresponding S. cerevisiae gene product
Function in S.c. The biological function of the corresponding S. cerevisiae gene product

Data table
Oligo ID ORF Name Urine:SC [0.016:3.2] uM NA S.cerevisiae homolog1 S.cerevisiae homolog2 Biological process in S.c. Function in S.c.
1395.1-808-877 CAGL0I06050g 0.03 0.20 YJL153C INO1 myo-inositol metabolism inositol-3-phosphate synthase activity
3391.1-111-181 CAGL0A01221g 0.04 0.21 YPR192W AQY1 sporulation (sensu Fungi)* water channel activity
2420.1-1773-1842 CAGL0E03201g 0.10 0.63 YGR157W CHO2 telomere maintenance* phosphatidylethanolamine N-methyltransferase activity
3796.1-565-634 CAGL0F00363g 0.11 0.82 YJR073C OPI3 phosphatidylcholine biosynthesis phosphatidyl-N-methylethanolamine N-methyltransferase activity
5786.1-759-828 CAGL0H01089g 0.12 1.17 YDR287W YDR287W inositol phosphate dephosphorylation inositol-1(or 4)-monophosphatase activity
7530.1-444-512 CAGL0L00539g 0.19 0.89 YMR184W YMR184W ER-associated protein catabolism molecular function unknown
5229.1-770-839 CAGL0B01947g 0.21 0.68 YDR123C INO2 positive regulation of transcription from RNA polymerase II promoter* specific RNA polymerase II transcription factor activity
8299.1-1666-1735 CAGL0M04367g 0.22 0.58 YLR133W CKI1 phosphatidylcholine biosynthesis choline kinase activity
5722.1-863-932 CAGL0F02233g 0.24 1.04 YFR006W YFR006W biological process unknown X-Pro aminopeptidase activity
1559.1-830-899 CAGL0G09449g 0.24 0.82 YGR189C CRH1 biological process unknown molecular function unknown
5165.1-367-437 CAGL0K00583g 0.25 0.43 YCR034W FEN1 vesicle-mediated transport* fatty acid elongase activity
9096.1-1167-1236 CAGL0M05841g 0.25 0.47 YKR061W KTR2 protein amino acid N-linked glycosylation* mannosyltransferase activity
9192.1-244-313 CAGL0E03025g 0.26 0.61 N/A N/A
6034.1-651-720 CAGL0M14047g 0.26 1.12 YMR318C ADH6 aldehyde metabolism* alcohol dehydrogenase (NADP+) activity
7708.1-1722-1791 CAGL0I09878g 0.27 0.60 YOR317W FAA1 lipid metabolism* long-chain-fatty-acid-CoA ligase activity
2356.1-577-646 CAGL0J07062g 0.27 1.09 YPL111W CAR1 arginine catabolism to ornithine zinc ion binding*
5456.1-987-1056 CAGL0M00880g 0.28 3.49 YLR438W CAR2 arginine catabolism ornithine-oxo-acid transaminase activity
676.1-537-606 CAGL0B04587g 0.28 0.64 YNL108C YNL108C metabolism molecular function unknown
2222.1-586-655 CAGL0K02959g 0.28 0.50 YHR004C NEM1 sporulation (sensu Fungi)* molecular function unknown
1933.1-722-791 CAGL0H03399g 0.28 0.76 YGL077C HNM1 choline transport choline transporter activity

Total number of rows: 125

Table truncated, full table size 13 Kbytes.




Table 3: Transcripts upregulated more than 2.5 fold under Niacin starvation (0.016:3.2 uM NA) header descriptions
Oligo ID ID of each oligonucleotide used on microarray
ORF Name Name of open reading frame corresponding to each oligonucleotide
C. glabrata gene name
[0.016:3.2] uM NA Ratio of transcript level in NA-starved cells (0.016 uM NA) versus non-starved cells (3.25 uM NA)
Urine:SC Ratio of transcript level in cells grown in human urine versus in SC medium
S.cerevisiae homolog1 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
S.cerevisiae homolog2 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
Biological process in S.c. The biological process involving the corresponding S. cerevisiae gene product
Function in S.c. The biological function of the corresponding S. cerevisiae gene product

Data table
Oligo ID ORF Name C. glabrata gene name [0.016:3.2] uM NA Urine:SC S.cerevisiae homolog1 S.cerevisiae homolog2 Biological process in S.c. Function in S.c.
9526.1-1357-1426 CAGL0L13354g TNR1 312.3 173.1 YOR192C YOR192C transport high affinity transporter of nicotinamide riboside
6031.1-997-1066 CAGL0M14113g TNR2 252.7 183.8 YOR192C YOR192C transport high affinity transporter of nicotinamide riboside
6847.1-3-72 CAGL0J04202g 52.6 9.2 YFL014W HSP12 response to oxidative stress* molecular function unknown
6860.1-657-727 CAGL0J04004g 25.9 1.3 YOR228C YOR228C biological process unknown molecular function unknown
223.1-592-661 CAGL0H07469g 23.3 5.6 YBR157C ICS2 biological process unknown molecular function unknown
7641.1-709-778 CAGL0L06578g 18.2 2.6 YGR225W AMA1 sporulation (sensu Fungi)* enzyme activator activity
1667.1-188-256 CAGL0F04631g 17.0 2.0 YBL049W MOH1 biological process unknown molecular function unknown
5854.1-41-110 CAGL0H02101g 16.8 2.3 YHR087W YHR087W RNA metabolism molecular function unknown
4305.1-2836-2905 CAGL0I07865g 16.5 2.2 YOL084W PHM7 biological process unknown molecular function unknown
5913.1-113-181 CAGL0I04444g 15.9 4.7 YAR015W ADE1 'de novo' IMP biosynthesis* phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
3221.1-332-401 CAGL0K10428g 15.9 2.7 YFR017C YFR017C biological process unknown molecular function unknown
3204.1-45-114 CAGL0K10164g 15.2 9.4 N/A N/A
2917.1-171-239 CAGL0J11550g 14.6 5.2 YNL195C YNL195C biological process unknown molecular function unknown
611.1-1061-1130 CAGL0F08371g TNA1 13.3 9.3 YGR260W TNA1 nicotinamide mononucleotide transport nicotinamide mononucleotide permease activity
8736.2-2722-2791 CAGL0H02387g 13.1 1.5 YML100W TSL1 response to stress* enzyme regulator activity*
3545.1-663-732 CAGL0G02189g 12.6 2.5 YKR080W MTD1 one-carbon compound metabolism* methylenetetrahydrofolate dehydrogenase (NAD+) activity
2451.1-1412-1481 CAGL0E03630g 11.6 4.6 YHL024W RIM4 meiosis* RNA binding
6051.1-4634-4703 CAGL0M13827g 10.9 1.4 YMR306W FKS3 biological process unknown 1,3-beta-glucan synthase activity
603.1-817-886 CAGL0F08261g 10.8 0.8 YGR254W ENO1 glycolysis* phosphopyruvate hydratase activity
6259.1-598-667 CAGL0M11660g 10.4 1.2 YIL053W RHR2 response to osmotic stress* glycerol-1-phosphatase activity

Total number of rows: 315

Table truncated, full table size 33 Kbytes.




Table 4: Transcripts down-regulated more than 2.5 fold under Niacin starvation (0.016:3.2 uM NA) header descriptions
Oligo ID ID of each oligonucleotide used on microarray
ORF Name Name of open reading frame corresponding to each oligonucleotide
[0.016:3.2] uM NA Ratio of transcript level in NA-starved cells (0.016 uM NA) versus non-starved cells (3.25 uM NA)
Urine:SC Ratio of transcript level in cells grown in human urine versus in SC medium
S.cerevisiae homolog1 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
S.cerevisiae homolog2 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
Biological process in S.c. The biological process involving the corresponding S. cerevisiae gene product
Function in S.c. The biological function of the corresponding S. cerevisiae gene product

Data table
Oligo ID ORF Name [0.016:3.2] uM NA Urine:SC S.cerevisiae homolog1 S.cerevisiae homolog2 Biological process in S.c. Function in S.c.
4871.1-266-335 CAGL0D02662g 0.06 1.05 YMR011W HXT2 hexose transport glucose transporter activity*
4871.1-422-490 CAGL0D02662g 0.06 1.17 YMR011W HXT2 hexose transport glucose transporter activity*
16502.1-1246-1315 CAGL0D02640g 0.16 1.33 YMR011W HXT2 hexose transport glucose transporter activity*
5618.1-444-513 CAGL0G07106g 0.18 0.61 YML022W APT1 AMP biosynthesis* adenine phosphoribosyltransferase activity
2675.1-1169-1238 CAGL0L03846 0.19 0.54 YNL112W DBP2 mRNA catabolism, nonsense-mediated decay RNA helicase activity
100.1-282-351 CAGL0H09064g 0.19 0.76 YHR128W FUR1 pyrimidine salvage uracil phosphoribosyltransferase activity
4410.1-1469-1538 CAGL0H05709g 0.20 0.53 YPL093W NOG1 ribosome biogenesis* GTP binding
1395.1-808-877 CAGL0I06050g 0.20 0.03 YJL153C INO1 myo-inositol metabolism inositol-3-phosphate synthase activity
3391.1-111-181 CAGL0A01221g 0.21 0.04 YPR192W AQY1 sporulation (sensu Fungi)* water channel activity
7716.1-843-912 CAGL0I09790g 0.21 0.57 YOR310C NOP58 ribosome biogenesis* molecular function unknown
4359.1-356-425 CAGL0I08547g 0.21 0.46 YER156C YER156C biological process unknown molecular function unknown
2425.1-856-924 CAGL0E03245g 0.22 0.58 YGR159C NSR1 telomere maintenance* RNA binding*
5090.1-2681-2750 CAGL0K01551g 0.22 0.42 YDL031W DBP10 ribosome biogenesis* ATP-dependent RNA helicase activity
8368.1-451-520 CAGL0M10197g 0.22 0.61 YKL009W MRT4 telomere maintenance* molecular function unknown
6254.1-14234-14303 CAGL0M11616g 0.22 0.59 YLR106C MDN1 rRNA processing* ATPase activity
7504.4-2831-2900 CAGL0L08756g 0.22 0.50 YPL012W RRP12 ribosome biogenesis* molecular function unknown
5852.1-308-377 CAGL0H02057g 0.23 0.65 YHR089C GAR1 ribosome biogenesis* RNA binding
54.1-1091-1160 CAGL0H09724g 0.23 0.62 YER006W NUG1 ribosome biogenesis* GTPase activity
8711.1-902-972 CAGL0K01859g 0.23 0.69 YDL014W NOP1 ribosome biogenesis* methyltransferase activity
1184.1-1299-1368 CAGL0A04015g 0.24 0.58 YLR197W SIK1 ribosome biogenesis* molecular function unknown

Total number of rows: 197

Table truncated, full table size 19 Kbytes.




Table 5: Transcripts upregulated both under Niacin starvation (0.016:3.2 uM NA, over 2.5 fold) and grown in human urine (over 2 fold) header descriptions
Oligo ID ID of each oligonucleotide used on microarray
ORF Name Name of open reading frame corresponding to each oligonucleotide
C. glabrata gene name
[0.016:3.2] uM NA Ratio of transcript level in NA-starved cells (0.016 uM NA) versus non-starved cells (3.25 uM NA)
Urine:SC Ratio of transcript level in cells grown in human urine versus in SC medium
S.cerevisiae homolog1 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
S.cerevisiae homolog2 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
Biological process in S.c. The biological process involving the corresponding S. cerevisiae gene product
Function in S.c. The biological function of the corresponding S. cerevisiae gene product

Data table
Oligo ID ORF Name C. glabrata gene name [0.016:3.2] uM NA Urine:SC S.cerevisiae homolog1 S.cerevisiae homolog2 Biological process in S.c. Function in S.c.
9526.1-1357-1426 CAGL0L13354g TNR1 312.3 173.1 YOR192C YOR192C transport high affinity transporter of nicotinamide riboside
6031.1-997-1066 CAGL0M14113g TNR2 252.7 183.8 YOR192C YOR192C transport high affinity transporter of nicotinamide riboside
6847.1-3-72 CAGL0J04202g 52.6 9.2 YFL014W HSP12 response to oxidative stress* molecular function unknown
223.1-592-661 CAGL0H07469g 23.3 5.6 YBR157C ICS2 biological process unknown molecular function unknown
7641.1-709-778 CAGL0L06578g 18.2 2.6 YGR225W AMA1 sporulation (sensu Fungi)* enzyme activator activity
1667.1-188-256 CAGL0F04631g 17.0 2.0 YBL049W MOH1 biological process unknown molecular function unknown
5854.1-41-110 CAGL0H02101g 16.8 2.3 YHR087W YHR087W RNA metabolism molecular function unknown
4305.1-2836-2905 CAGL0I07865g 16.5 2.2 YOL084W PHM7 biological process unknown molecular function unknown
5913.1-113-181 CAGL0I04444g 15.9 4.7 YAR015W ADE1 'de novo' IMP biosynthesis* phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
3221.1-332-401 CAGL0K10428g 15.9 2.7 YFR017C YFR017C biological process unknown molecular function unknown
3204.1-45-114 CAGL0K10164g 15.2 9.4 N/A N/A
2917.1-171-239 CAGL0J11550g 14.6 5.2 YNL195C YNL195C biological process unknown molecular function unknown
611.1-1061-1130 CAGL0F08371g TNA1 13.3 9.3 YGR260W TNA1 nicotinamide mononucleotide transport nicotinamide mononucleotide permease activity
3545.1-663-732 CAGL0G02189g 12.6 2.5 YKR080W MTD1 one-carbon compound metabolism* methylenetetrahydrofolate dehydrogenase (NAD+) activity
2451.1-1412-1481 CAGL0E03630g 11.6 4.6 YHL024W RIM4 meiosis* RNA binding
3508.1-1655-1724 CAGL0G05544g 10.4 2.9 YDL223C HBT1 cellular morphogenesis during conjugation with cellular fusion molecular function unknown
4617.1-846-915 CAGL0K12716g 10.0 2.5 YFL040W YFL040W biological process unknown molecular function unknown
5755.1-921-990 CAGL0F01749g 9.3 3.2 YLR058C SHM2 one-carbon compound metabolism glycine hydroxymethyltransferase activity
326.1-240-309 CAGL0H06237g 8.9 2.8 YAL018C YAL018C biological process unknown molecular function unknown
7867.1-538-607 CAGL0J01331g 8.7 2.1 YMR090W YMR090W biological process unknown molecular function unknown

Total number of rows: 60

Table truncated, full table size 6 Kbytes.




Table 6: Transcripts down-regulated both under Niacin starvation (0.016:3.2 uM NA, over 2.5 fold) and grown in human urine (over 2 fold) header descriptions
Oligo ID ID of each oligonucleotide used on microarray
ORF Name Name of open reading frame corresponding to each oligonucleotide
[0.016:3.2] uM NA Ratio of transcript level in NA-starved cells (0.016 uM NA) versus non-starved cells (3.25 uM NA)
urine:SC
S.cerevisiae homolog1 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
S.cerevisiae homolog2 The corresponding S. cerevisiae gene homologue of a given C. glabrata ORF
Biological process in S.c. The biological process involving the corresponding S. cerevisiae gene product
Function in S.c. The biological function of the corresponding S. cerevisiae gene product

Data table
Oligo ID ORF Name [0.016:3.2] uM NA urine:SC S.cerevisiae homolog1 S.cerevisiae homolog2 Biological process in S.c. Function in S.c.
1395.1-808-877 CAGL0I06050g 0.20 0.03 YJL153C INO1 myo-inositol metabolism inositol-3-phosphate synthase activity
3391.1-111-181 CAGL0A01221g 0.21 0.04 YPR192W AQY1 sporulation (sensu Fungi)* water channel activity
4359.1-356-425 CAGL0I08547g 0.21 0.46 YER156C YER156C biological process unknown molecular function unknown
5090.1-2681-2750 CAGL0K01551g 0.22 0.42 YDL031W DBP10 ribosome biogenesis* ATP-dependent RNA helicase activity
6544.1-1729-1798 CAGL0J02816g 0.27 0.47 YER049W YER049W ribosome biogenesis molecular function unknown
8808.2-2673-2742 CAGL0K09614g 0.28 0.50 YNL132W KRE33 ribosome biogenesis molecular function unknown
8398.1-757-825 CAGL0E01771g 0.30 0.48 YDR144C MKC7 proteolysis aspartic-type signal peptidase activity
1073.1-861-930 CAGL0C02189g 0.32 0.34 YER043C SAH1 methionine metabolism* adenosylhomocysteinase activity
6902.1-945-1014 CAGL0J03476g 0.35 0.49 YCR072C YCR072C ribosome biogenesis* molecular function unknown
7307.1-200-269 CAGL0H00572g 0.35 0.35 YJR116W YJR116W biological process unknown molecular function unknown
8805.1-1065-1134 CAGL0K09570g 0.35 0.32 YNL130C CPT1 phosphatidylcholine biosynthesis diacylglycerol cholinephosphotransferase activity
4974.1-1112-1181 CAGL0D04708g 0.36 0.43 YPR124W CTR1 copper ion import copper uptake transporter activity
8103.1-2231-2300 CAGL0L04092g 0.39 0.46 YNL123W YNL123W lipid metabolism* serine-type peptidase activity
8540.1-944-1013 CAGL0L13068g 0.39 0.38 YHR123W EPT1 phosphatidylethanolamine biosynthesis ethanolaminephosphotransferase activity
4753.1-368-437 CAGL0D03388g 0.39 0.33 YJL024C APS3 vesicle-mediated transport* molecular function unknown
1641.1-427-496 CAGL0G08294g 0.40 0.44 YLR243W YLR243W biological process unknown signal sequence binding

Total number of rows: 16


Table 7: Transcription profile of all genes in NA-starved (0.016 uM NA) C. glabrata cells versus non-starved (3.25 uM NA) header descriptions
Oligo ID ID of each oligonucleotide used on microarray
ORF Name Name of open reading frame corresponding to each oligonucleotide
Score(d) The T-statistic value calculated by SAM 2.0 software (The higher the absolute value of the Score, the more significant of a given transcript)
[0.016:3.2] mM NA [0.016:3.2] uM NA: Ratio of transcript level in NA-starved cells (0.016 uM NA) versus non-starved cells (3.25 uM NA)
Denominator(s+s0) Denominator of the T-statistics
q-value(%) The lowest false discovery rate of each given transcript
localfdr(%) Local false discovery rate of each given transcript

Data table
Oligo ID ORF Name Score(d) [0.016:3.2] mM NA Denominator(s+s0) q-value(%) localfdr(%)
6860.1-657-727 CAGL0J04004g 20.03 25.87 0.23 0.00 0.00
3204.1-45-114 CAGL0K10164g 18.18 15.17 0.22 0.00 0.00
7641.1-709-778 CAGL0L06578g 17.80 18.25 0.24 0.00 0.00
6847.1-3-72 CAGL0J04202g 17.75 52.57 0.32 0.00 0.00
5913.1-113-181 CAGL0I04444g 17.75 15.94 0.23 0.00 0.00
1518.1-4038-4107 CAGL0G09977g 16.24 9.84 0.20 0.00 0.00
3545.1-663-732 CAGL0G02189g 15.92 12.57 0.23 0.00 0.00
611.1-1061-1130 CAGL0F08371g 15.91 13.28 0.23 0.00 0.00
1667.1-188-256 CAGL0F04631g 15.54 16.98 0.26 0.00 0.00
9526.1-1357-1426 CAGL0L13354g 15.35 312.32 0.54 0.00 0.00
7867.1-538-607 CAGL0J01331g 15.13 8.67 0.21 0.00 0.01
5854.1-41-110 CAGL0H02101g 14.81 16.84 0.28 0.00 0.01
2451.1-1412-1481 CAGL0E03630g 14.49 11.64 0.24 0.00 0.01
4305.1-2836-2905 CAGL0I07865g 14.23 16.50 0.28 0.00 0.02
10894.1-333-402 NA 14.22 72.15 0.43 0.00 0.02
9372.1-188-257 CAGL0M04675g 14.12 8.12 0.21 0.00 0.02
3015.3-328-396 CAGL0A01716g 13.96 7.69 0.21 0.00 0.02
5633.1-1927-1996 CAGL0G04455g 13.80 7.27 0.21 0.00 0.02
6031.1-997-1066 CAGL0M14113g 13.79 252.67 0.58 0.00 0.02
350.3-2251-2320 CAGL0F04895g 13.36 7.85 0.22 0.00 0.03

Total number of rows: 5908

Table truncated, full table size 308 Kbytes.




Table 8: Transcription profile of all genes in C. glabrata cells grown in human urine versus in SC medium header descriptions
Oligo ID ID of each oligonucleotide used on microarray
ORF Name Name of open reading frame corresponding to each oligonucleotide
Score(d) The T-statistic value calculated by SAM 2.0 software (The higher the absolute value of the Score, the more significant of a given transcript)
Urine:SC
Denominator(s+s0) Denominator of the T-statistics
q-value(%) The lowest false discovery rate of each given transcript
localfdr(%) Local false discovery rate of each given transcript

Data table
Oligo ID ORF Name Score(d) Urine:SC Denominator(s+s0) q-value(%) localfdr(%)
9526.1-1357-1426 CAGL0L13354g 34.60 173.06 0.21 0.00 0.00
6031.1-997-1066 CAGL0M14113g 25.62 183.79 0.29 0.00 0.00
10894.1-333-402 NA 18.76 76.50 0.33 0.00 0.04
3204.1-45-114 CAGL0K10164g 8.46 9.41 0.38 0.00 0.00
7171.1-5296-5365 CAGL0M05533g 8.38 21.52 0.53 0.00 0.00
734.1-1256-1324 CAGL0B03839g 8.13 12.31 0.45 0.00 0.00
611.1-1061-1130 CAGL0F08371g 8.03 9.29 0.40 0.00 0.00
223.1-592-661 CAGL0H07469g 7.47 5.64 0.33 0.00 0.00
4336.1-2267-2336 CAGL0I08305g 7.18 3.11 0.23 0.00 0.00
5413.1-3980-4049 CAGL0M00374g 7.06 13.39 0.53 0.00 0.00
2451.1-1412-1481 CAGL0E03630g 7.03 4.58 0.31 0.00 0.00
2917.1-171-239 CAGL0J11550g 6.87 5.20 0.35 0.00 0.00
4933.1-2384-2453 CAGL0D05280g 6.65 14.65 0.58 0.00 0.15
4109.1-1452-1521 CAGL0C05027g 6.29 2.88 0.24 0.00 0.75
6847.1-3-72 CAGL0J04202g 6.28 9.22 0.51 0.00 0.77
5654.1-1436-1505 CAGL0G04741g 6.25 4.50 0.35 0.00 0.84
8611.1-2447-2516 CAGL0L12342g 5.96 7.06 0.47 0.00 1.45
3508.1-1655-1724 CAGL0G05544g 5.84 2.90 0.26 0.00 1.72
8449.1-555-624 CAGL0L02321g 5.62 8.20 0.54 0.00 2.29
1916.2-856-925 CAGL0H03575g 5.34 2.80 0.28 0.00 3.11

Total number of rows: 5908

Table truncated, full table size 311 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE6582_RAW.tar 12.1 Mb (http)(custom) TAR (of GPR)

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