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Series GSE65884 Query DataSets for GSE65884
Status Public on Apr 22, 2016
Title PDGFRα+ cells in ESC cultures represent the in vitro equivalent of the pre-implantation primitive endoderm precursors
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Mouse Embryonic Stem Cells (ESCs) express PDGFRα heterogeneously, fluctuating between a PDGFRα+ (PrE-primed) and a Platelet Endothelial Cell Adhesion Molecule 1 (PECAM1)-positive state (epiblast-primed). The two surface markers can be co-detected on a third subpopulation, expressing epiblast and PrE determinants.
Overall design Three different subpopulatiosn were sorted based on PECAM1/PDGFRa expression and analyzed by NGS
Contributor(s) Lo Nigro A, Verfaillie CM
Citation(s) 28089671
Submission date Feb 12, 2015
Last update date Sep 27, 2019
Contact name Antonio Lo Nigro
Organization name Ismett
Street address Via tricomi 5
City Palermo
ZIP/Postal code 90134
Country Italy
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (6)
GSM1608255 PECAM1minPDGFRaplusExp1
GSM1608256 PECAM1minPDGFRaplusExp2
GSM1608257 PECAM1plusPDGFRaminExp1
BioProject PRJNA275302
SRA SRP054972

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65884_RPKM_preprocessed.txt.gz 667.9 Kb (ftp)(http) TXT
GSE65884_Raw_counts.txt.gz 449.2 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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