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| Status |
Public on Apr 01, 2015 |
| Title |
Transcriptome-wide analysis of gene expression in 4-day-old WT and athb1-1 mutant seedlings grown under short day conditions |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To understand which genes acts downstream AtHB1 affecting hypocotyl growth in Arabidopsis thaliana, we performed transcriptional profiles of 4-day-old seedlings grown in a short-day regime comparing wild-type with athb1-1 mutant plants. These results show that some of the AtHB1-regulated genes modulate cell elongation, particularly cell wall composition and elongation, or encode proteins that serve as a source of carbon, nitrogen, and sulfur for early seedling growth.
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| Overall design |
RNA-Seq data for 4-day-old wild-type (Col-0) and athb1-1 mutant seedlings grown under short-day conditions. Biological triplicates were performed for each genotype analyzed.
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| Contributor(s) |
Chan RL |
| Citation(s) |
25865500 |
| |
| Submission date |
Mar 09, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Raquel Lia Chan |
| E-mail(s) |
rchan@fbcb.unl.edu.ar
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| Organization name |
Instituto de Agrobiotecnología del Litoral (CONICET/UNL)
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| Lab |
Laboratorio de Biotecnologia Vegetal
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| Street address |
Centro Científico Tecnológico CONICET Santa Fe, Colectora Ruta Nac. Nº 168 km. 0, Paraje El Pozo
|
| City |
Santa Fe |
| State/province |
Santa Fe |
| ZIP/Postal code |
S3000ZAA |
| Country |
Argentina |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA277695 |
| SRA |
SRP055992 |
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