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| Status |
Public on May 16, 2007 |
| Title |
Ratios for Htz1D cells (Agilent array) |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
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| Summary |
Chromatin plays roles in processes governed by different time scales. To assay the dynamic behaviour of chromatin in living cells, we used genomic tiling arrays to measure histone H3 turnover in G1-arrested S. cerevisiae at single-nucleosome resolution over 4% of the genome, and over the entire genome at lower (~265 bp) resolution. We find that nucleosomes at promoters are replaced more rapidly than at coding regions, and that replacement rates over coding regions correlate with polymerase density. In addition, rapid histone turnover is found at known chromatin boundary elements. These results suggest that rapid histone turnover serves to functionally separate chromatin domains and prevent spread of histone states.
Keywords: Chip-chip, htz1, histone turnover
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| Overall design |
Ratios between Gal-induced H3-Flag and constitutive H3-Myc at Htz1-deleted cells. Hybridization to 44K Agilent arrays covering the yeast genome at ~265bp-resolution.
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| Contributor(s) |
Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando O |
| Citation(s) |
17347438 |
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| Submission date |
Jan 06, 2007 |
| Last update date |
Mar 17, 2012 |
| Contact name |
Tommy Kaplan |
| E-mail(s) |
tommy@cs.huji.ac.il
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| Organization name |
Hebrew University
|
| Department |
School of Computer Science and Engineering
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| Street address |
Givat Ram Campus
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| City |
Jerusalem |
| ZIP/Postal code |
91904 |
| Country |
Israel |
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| Platforms (1) |
| GPL3737 |
Agilent-012713 Yeast Whole Genome ChIP-on-chip Microarray (G4486A) |
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| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE6680 |
Dynamics of replication-independent histone turnover in budding yeast |
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| Relations |
| BioProject |
PRJNA104253 |
