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Series GSE66882 Query DataSets for GSE66882
Status Public on Sep 01, 2015
Title The microRNA-212/132 cluster regulates B cell development and apoptosis by targeting SOX4
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary MicroRNAs have emerged as key regulators of B cell fate decisions and immune function. Deregulation of several microRNAs in B cells leads to the development of autoimmune disease and cancer in mice. We demonstrate that the microRNA-212/132 cluster (miR-212/132) is induced in B cells in response to B cell receptor signaling. Enforced expression of miR-132 results in a block in early B cell development at the pre-pro-B cell to pro-B cell transition and induces apoptosis in primary bone marrow B cells. Importantly, loss of miR-212/132 results in increased B cell output under non-homeostatic conditions. We find that miR-212/132 regulates B lymphopoiesis by targeting the transcription factor SOX4. Co-expression of SOX4 with miR-132 rescues the defect in B cell development from over-expression of miR-132 alone. In addition, we show that the expression of miR-132 in cells that are prone to spontaneous B cell cancers can have a protective effect on cancer development. We have thus uncovered a novel regulator of B cell lineage specification that may potential applications in B cell cancer therapy
 
Overall design RNA-seq of wild-type and microRNA-212/132 knock-out B-cells after IgM stimulation
 
Contributor(s) Mehta A, Marinov GK, Baltimore D
Citation(s) 26371188
Submission date Mar 13, 2015
Last update date May 15, 2019
Contact name Georgi Kolev Marinov
Organization name STANFORD UNIVERSITY
Department Genetics
Street address 279 Campus Drive West, Beckman Center, B-257A/259
City Stanford
State/province California
ZIP/Postal code 94305-5101
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (6)
GSM1633721 13898-KO-413_Bcell_aIgM_8h
GSM1633722 13899-WT-422_Bcell_aIgM_8h
GSM1633723 13900-KO-413_Bcell_aIgM_20h
Relations
BioProject PRJNA278162
SRA SRP056154

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Supplementary file Size Download File type/resource
GSE66882_RAW.tar 849.6 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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