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Status |
Public on May 18, 2015 |
Title |
Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders |
Organisms |
Strongylocentrotus purpuratus; Danio rerio; Mus musculus |
Experiment type |
Other
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Summary |
Comparison of conserved TAD boundaries reveals that diverging CTCF sites is an evolutionary conserved signature associated with TAD borders
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Overall design |
4C-seq samples for six gene family promoters in different samples: E9.5 and E14.5 mouse embryos ; 24hpf, 48hpf, 80%epiboly and Dome zebrafish embryos ; 48hpf S.purpuratus embryos
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Contributor(s) |
Gómez-Marín C, Tena JJ, Domínguez-Acemel R, Naranjo S, Maeso I, De la Calle-Mustienes E, Beccari L, Vielmas E, López-Mayorga M, Bovolenta P, Carvajal JJ, Gómez-Skarmeta JL |
Citation(s) |
26034287 |
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Submission date |
Mar 13, 2015 |
Last update date |
Feb 23, 2022 |
Contact name |
Carlos Gómez |
E-mail(s) |
cgommar@hotmail.com
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Organization name |
Centro Andaluz de Biologia del Desarrollo
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Street address |
Crta Utrera km 1
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City |
Seville |
State/province |
Seville |
ZIP/Postal code |
41013 |
Country |
Spain |
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Platforms (3) |
GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
GPL19892 |
Illumina HiSeq 2000 (Strongylocentrotus purpuratus) |
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Samples (63)
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Relations |
BioProject |
PRJNA278402 |
SRA |
SRP056206 |