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| Status |
Public on Nov 20, 2018 |
| Title |
Fitness assay of Candida albicans strains grown in vitro or in vivo in a mouse model of gastrointestinal colonization |
| Organism |
Candida albicans |
| Experiment type |
Other
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| Summary |
Candida albicans is part of the human gastrointestinal (GI) microbiota. To better understand how C. albicans efficiently establishes GI colonisation, we competitively challenged growth of 572 signature-tagged strains (~10% genome coverage), each conditionally overexpressing a single gene, in the murine gut. We identified CRZ2, a transcription factor whose overexpression and deletion respectively increased and decreased early GI colonisation. Using clues from genome-wide expression and gene-set enrichment analyses, we found that the optimal activity of Crz2p occurs under hypoxia at 37°C, as evidenced by both phenotypic and transcriptomic analyses following CRZ2 genetic perturbation. Consistent with early colonisation of the GI tract, we show that CRZ2 overexpression confers resistance to acidic pH and bile salts, suggesting an adaptation to the upper sections of the gut. Genome-wide location analyses revealed that Crz2p directly modulates the expression of many mannosyltransferase- and cell-wall protein-encoding genes, suggesting a link with cell-wall function. We show that CRZ2 overexpression alters cell-wall phosphomannan abundance and increases sensitivity to tunicamycin, suggesting a role in protein glycosylation. Our study reflects the powerful use of gene overexpression as a complementary approach to gene deletion to identify relevant biological pathways involved in C. albicans interaction with the host environment.
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| Overall design |
12 samples in total:
Samples 1-3 (Fitness_in vitro_rep1, rep2 and rep3) are three independent biological replicates of in vitro fitness profiling data.
Samples 4-8 (Fitness_in vivo_+Dox_rep1, rep2, rep3, rep4 and rep5) are 5 independent biological replicates of in vivo fitness profiling data from dox-treated mice.
Samples 9-12 (Fitness_in vivo_-Dox_rep1, rep2, rep3 and rep4) are 4 independent biological replicates of in vivo fitness profiling data from dox-untreated mice.
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| Contributor(s) |
Znaidi S |
| Citation(s) |
29998470 |
| |
| Submission date |
Mar 24, 2015 |
| Last update date |
Dec 25, 2018 |
| Contact name |
Sadri ZNAIDI |
| E-mail(s) |
sadri.znaidi@gmail.com
|
| Organization name |
Institut Pasteur
|
| Department |
Mycology Department
|
| Lab |
Fungal Biology and Pathogenicity
|
| Street address |
25 rue du Docteur Roux
|
| City |
Paris |
| ZIP/Postal code |
75015 |
| Country |
France |
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| Platforms (1) |
| GPL17420 |
Agilent-030094 Candida albicans 15k v2 Barcode microarray |
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| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE67235 |
Systematic gene overexpression in Candida albicans identifies a regulator of early adaptation to the mammalian gut |
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| Relations |
| BioProject |
PRJNA279299 |
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