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Series GSE67565 Query DataSets for GSE67565
Status Public on Oct 01, 2015
Title Comparative genome hybridization of Enteropathogenic Yersinia
Platform organisms Yersinia pseudotuberculosis IP 32953; Yersinia pseudotuberculosis IP 31758; Yersinia enterocolitica subsp. enterocolitica 8081; Yersinia pseudotuberculosis YPIII; Yersinia pseudotuberculosis PB1/+; Yersinia enterocolitica W22703; Yersinia enterocolitica subsp. palearctica Y11; Yersinia enterocolitica subsp. palearctica 105.5R(r)
Sample organisms Yersinia enterocolitica; Yersinia pseudotuberculosis; Yersinia pekkanenii
Experiment type Genome variation profiling by array
Summary Enteropathogenic Yersinia enterocolitica and Yersinia pseudotuberculosis share many traits in terms of infections they cause, but their epidemiology and ecology seem to differ in many ways. Pigs are the only known reservoir for Y. enterocolitica 4/O:3 strains while Y. pseudotuberculosis strains have been isolated from variety of sources including fresh vegetables and wild animals. A comparative genomic hybridization (CGH) analysis with a DNA microarray based on three Yersinia enterocolitica and four Yersinia pseudotuberculosis genomes was conducted to shed light on genomic differences between the enteropathogenic Yersinia. In total 99 strains isolated from various sources were hybridized and analyzed.
 
Overall design Array CGH. Two-color hybridizations on 8x15K Agilent arrays. Eleven reference strain (Y. enterocolitica strain 8081, Y. enterocolitica strain DSM 130 30 and Y. pseudotuberculosis IP32953) hybridizations and four replicate hybridizations of strain HV.
 
Contributor(s) Jaakkola K, Korkeala H, Somervuo P
Citation(s) 26605338
Submission date Apr 03, 2015
Last update date Dec 31, 2015
Contact name Kaisa Aulikki Jaakkola
E-mail(s) kaisa.jaakkola@gmail.com
Organization name University of Helsinki, Faculty of veterinary medicine
Department The Department of Food Hygiene and Environmental Health
Street address Agnes Sjöbergin katu 2
City University of Helsinki
ZIP/Postal code 00014
Country Finland
 
Platforms (1)
GPL19993 Agilent-036401 Yersinia panarray v.1.1
Samples (111)
GSM1649593 Strain 8081_4
GSM1649594 Strain 8081_2
GSM1649595 Strain 8081_3
Relations
BioProject PRJNA280273

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE67565_253640110001_1_2.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110001_1_3.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110001_1_4.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110001_1_5.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110001_1_6.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110001_1_8.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110002_8_1.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110002_8_2.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110002_8_3.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110002_8_4.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110002_8_5.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110002_8_6.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110002_8_7.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110002_8_8.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110003_7_1.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110003_7_2.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110003_7_3.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110003_7_4.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110003_7_5.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110003_7_6.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110003_7_7.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110003_7_8.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110004_6_1.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110004_6_2.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110004_6_3.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110004_6_4.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110004_6_5.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110004_6_6.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110004_6_7.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110004_6_8.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110005_4_1.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110005_4_2.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110005_4_3.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110005_4_4.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110005_4_5.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110005_4_6.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110005_4_7.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110005_4_8.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110006_5_1.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110006_5_3.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110006_5_4.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110006_5_7.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110007_3_1.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110007_3_2.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110007_3_3.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110007_3_4.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110007_3_5.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110007_3_6.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110007_3_7.gpr.gz 1.4 Mb (ftp)(http) GPR
GSE67565_253640110007_3_8.gpr.gz 1.5 Mb (ftp)(http) GPR
GSE67565_253640110008_2_1.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110008_2_2.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110008_2_3.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110008_2_4.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110008_2_5.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110008_2_6.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110008_2_7.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_253640110008_2_8.gpr.gz 1.6 Mb (ftp)(http) GPR
GSE67565_Normalized99hybridizations_tilingfix.txt.gz 1.8 Mb (ftp)(http) TXT
GSE67565_RAW.tar 150.0 Kb (http)(custom) TAR
Processed data included within Sample table
Processed data are available on Series record
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