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Status |
Public on Mar 28, 2016 |
Title |
Identification of CLF-regulated transcripts in embryos at the mature-green stage by strand-specific RNA-sequencing in Arabidopsis |
Organism |
Arabidopsis thaliana |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
CURLY LEAF (CLF), the major histone methyltransferase of Polycomb Repressive Complex 2 (PRC2), modifies trimethylation of histone H3 lysine 27 (H3K27me3) and mediates dynamical chromatin repression in Arabidopsis. Our previous results suggested that CLF may play regulatory roles on seed size and lipid biosynthesis in embryos at the mature-green stages. Here we used strand specific RNA-sequencing to profile Arabidopsis transcriptomes obtained from isolated embryos at the mature-green stage of Col-0 and clf-28 plants. Our analysis identified a large number of CLF-regulatedd transcripts in developmenting embryos in Arabidopsis.
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Overall design |
Issolated embryos of WT and clf-28 with 2 biological replicates
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Contributor(s) |
Liu J, Wu H, Deng S, Wang H, Chua N |
Citation(s) |
26945048 |
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Submission date |
Apr 21, 2015 |
Last update date |
May 15, 2019 |
Contact name |
Jun Liu |
E-mail(s) |
liujun@caas.cn
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Organization name |
Institute of Crop Science
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Department |
Chinese Academy of Agricultural Sciences
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Lab |
Jun Liu lab
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Street address |
1230 York Avenue
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City |
No.12 Zhongguancun South Street, Haidian |
State/province |
Beijing |
ZIP/Postal code |
100081 |
Country |
China |
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Platforms (1) |
GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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Samples (4)
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Relations |
BioProject |
PRJNA281702 |
SRA |
SRP057493 |