NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE68080 Query DataSets for GSE68080
Status Public on Mar 28, 2016
Title Identification of CLF-regulated transcripts in embryos at the mature-green stage by strand-specific RNA-sequencing in Arabidopsis
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary CURLY LEAF (CLF), the major histone methyltransferase of Polycomb Repressive Complex 2 (PRC2), modifies trimethylation of histone H3 lysine 27 (H3K27me3) and mediates dynamical chromatin repression in Arabidopsis. Our previous results suggested that CLF may play regulatory roles on seed size and lipid biosynthesis in embryos at the mature-green stages. Here we used strand specific RNA-sequencing to profile Arabidopsis transcriptomes obtained from isolated embryos at the mature-green stage of Col-0 and clf-28 plants. Our analysis identified a large number of CLF-regulatedd transcripts in developmenting embryos in Arabidopsis.
 
Overall design Issolated embryos of WT and clf-28 with 2 biological replicates
 
Contributor(s) Liu J, Wu H, Deng S, Wang H, Chua N
Citation(s) 26945048
Submission date Apr 21, 2015
Last update date May 15, 2019
Contact name Jun Liu
E-mail(s) liujun@caas.cn
Organization name Institute of Crop Science
Department Chinese Academy of Agricultural Sciences
Lab Jun Liu lab
Street address 1230 York Avenue
City No.12 Zhongguancun South Street, Haidian
State/province Beijing
ZIP/Postal code 100081
Country China
 
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (4)
GSM1662397 Wild-type_r1
GSM1662398 Wild-type_r2
GSM1662399 clf-28_r1
Relations
BioProject PRJNA281702
SRA SRP057493

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68080_genes.fpkm_tracking.gz 1.8 Mb (ftp)(http) FPKM_TRACKING
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.