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Series GSE68373 Query DataSets for GSE68373
Status Public on Aug 31, 2015
Title miR-1246 association with distant metastasis and poor prognosis in breast cancer patients
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary Circulating microRNAs have recently emerged as a new class of promising non-invasive cancer biomarkers. The purpose of this study was the identification by a high-throughput approach (miRNA microarray) of circulating miRNAs associated with breast cancer-derived distant metastasis. To achieve this goal, we resorted to archival plasma samples collected from patients in the control arm of a randomized clinical trial on stage I breast cancer. We compared plasma miRNA levels in patients that developed distant metastasis after a radical or conservative surgery and in those long-term disease-free. Microarray results were technically and independently validated by Real Time PCR. Subsequent in vitro, in vivo and in silico analyses were performed to investigate the miRNA biological/clinical significance in relation with breast cancer progression. We demonstrated that high circulating miR-1246 levels were associated to distant metastasis and that high tissue expression of this miRNA was correlated with unfavorable outcome in ER+HER2- breast cancer patients. In addition, miR-1246 expression was also found to be related with stem-like features.
 
Overall design 64 samples (32 patients with metastasis and 32 patients with no metastasis) were considered from a total of 208 hybridized samples collected between 1987 and 2004 (including 94 paired samples according to tumor ER status, age at drawing, drawing year, time from surgery, 7 additional samples from 'no evidence of disease' (NED) patients, 10 references, 1 healthy donor and 2 replicated samples)
 
Contributor(s) Landoni E, Callari M
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Submission date Apr 28, 2015
Last update date Sep 01, 2015
Contact name Elena Landoni
E-mail(s) elena.landoni@istitutotumori.mi.it
Organization name Fondazione IRCCS Istituto Nazionale dei Tumori
Street address Via Vanzetti 5
City Milano
ZIP/Postal code 20133
Country Italy
 
Platforms (1)
GPL16770 Agilent-031181 Unrestricted_Human_miRNA_V16.0_Microarray (miRBase release 16.0 miRNA ID version)
Samples (64)
GSM1463189 US 13
GSM1463190 US 14
GSM1463196 US 23
Relations
BioProject PRJNA282533

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68373_RAW.tar 188.8 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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