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Series GSE68650 Query DataSets for GSE68650
Status Public on Mar 31, 2017
Title Injury-activated endocardium plays structural and signalling roles in zebrafish heart regeneration
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary The zebrafish heart remarkably regenerates after a severe ventricular damage followed by inflammation, fibrotic tissue deposition and removal concomitant with cardiac muscle replacement. We have investigated the role of the endocardium in this regeneration process. 3D-whole mount imaging in injured hearts revealed that GFP-labelled endocardial cells in ET33mi-60A transgenic fish become rapidly activated and highly proliferative at 3 days post cryoinjury (dpci). Endocardial cells extensively expand within the injury site and organize to form a coherent structure at 9 dpci that persists throughout the regeneration process. Upon injury, endocardial cells strongly up-regulate the Notch pathway ligand delta like4 (dll4) and the Notch receptors notch1b, notch2 and notch3. Expression profiling showed that Notch signalling inhibition affects endocardial gene expression and genes related to extracellular matrix remodelling and inflammation. Gain- and loss-of-function experiments revealed that Notch is required for the organization of the endocardium, attenuation of the inflammatory response and cardiomyocyte proliferation. These results demonstrate a novel structural and signalling role for the endocardium during heart regeneration.
 
Overall design RNA was extracted from apical tip of heart ventricles 72h after cryoinjured adult zebrafish heart treated with DMSO (Controls) or RO gamma secretase inhibitor at 24 and 48h post injury.
 
Contributor(s) Münch J, Grivas D, González-Rajal A, Luis de la Pompa J
Citation(s) 28242613
Submission date May 07, 2015
Last update date Sep 08, 2022
Contact name Jose Luis de la Pompa
E-mail(s) jlpompa@cnic.es
Organization name Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC).
Lab Intercellular Signalling in Cardiovascular Development & Disease
Street address Melchor Fernández Almagro 3
City Madrid
ZIP/Postal code 28029
Country Spain
 
Platforms (1)
GPL15583 Illumina Genome Analyzer IIx (Danio rerio)
Samples (6)
GSM1678057 DMSO_Control_1
GSM1678058 DMSO_Control_2
GSM1678059 DMSO_Control_3
Relations
BioProject PRJNA283297
SRA SRP058095

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68650_ROvsControl.NormCounts.csv.gz 523.0 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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