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Series GSE68990 Query DataSets for GSE68990
Status Public on Dec 01, 2019
Title Translational profiling of RBMX-overexpressed HEK293 cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Wild-type and RBMX-overexpressed HEK293 cells where profiled at the transcriptome and translatome levels through polysomal profiling. Paired-end RNA-seq libraries were built and sequenced on an Illumina HiSeq 2000 machine to allow for accurate gene expression quantification and alternative splicing isoforms detection.
 
Overall design 3 biological samples per condition are used. A total of 12 samples were used: 3 are the wild-type total RNA, 3 are the wild-type polysomal RNA, 3 are the RBMX-overexpressed total RNA and 3 are the RBMX-overexpressed polysomal RNA.
 
Contributor(s) Dassi E
Citation(s) 33005630
Submission date May 18, 2015
Last update date Oct 05, 2020
Contact name Erik Dassi
E-mail(s) erik.dassi@unitn.it
Organization name University of Trento
Department CIBIO
Street address Via Sommarive, 9
City Trento
State/province TN
ZIP/Postal code 38123
Country Italy
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (12)
GSM1689776 WT_TOT_Rep1
GSM1689777 WT_TOT_Rep2
GSM1689778 WT_TOT_Rep3
Relations
BioProject PRJNA284260
SRA SRP058448

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE68990_genes.fpkm_table.txt.gz 984.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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