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| Status |
Public on Aug 01, 2015 |
| Title |
Comparative transcriptome analysis in response to heat stress in Arabidopsis thaliana and Arabidopsis lyrata |
| Organisms |
Arabidopsis thaliana; Arabidopsis lyrata subsp. lyrata |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Arabidopsis thaliana and Arabidopsis lyrata are two closely related Brassicaceae species, which are used as models for plant comparative biology. They differ by lifestyle, predominant mating strategy, ecological niches and genome organization. To identify heat stress induced genes, we performed RNA-sequencing of rosette leaves from mock-treated, heat-stressed and heat-stressed-recoved plants of both species.
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| Overall design |
Analysis of genetic element transcriptional changes in response to 6 hours of 37°C heat stress and 48 hours of recovery in Arabidopsis thaliana Col-0 and Arabidopsis lyrata MN47.
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| Contributor(s) |
Pietzenuk B, Rawat V, Schneeberger K, Pecinka A |
| Citation(s) |
26382944, 27729060 |
| Submission date |
May 20, 2015 |
| Last update date |
Jul 16, 2019 |
| Contact name |
Ales Pecinka |
| E-mail(s) |
pecinka@ueb.cas.cz
|
| Phone |
+420 585 238 709
|
| Organization name |
Institute of Experimental Botany
|
| Department |
Centre of Plant Structural and Functional Genomics
|
| Lab |
Pecinka group
|
| Street address |
Slechtitelu 31
|
| City |
Olomouc - Holice |
| ZIP/Postal code |
783 71 |
| Country |
Czech Republic |
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| Platforms (2) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
| GPL20226 |
Illumina HiSeq 2500 (Arabidopsis lyrata subsp. lyrata) |
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| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE81496 |
Arabidopsis lyrata gene annotation using RNA-sequencing data |
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| Relations |
| BioProject |
PRJNA284487 |
| SRA |
SRP058527 |
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