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| Status |
Public on Aug 01, 2015 |
| Title |
Comparative transcriptome profiling of Arabidopsis lyrata and Arabidopsis thaliana |
| Organisms |
Arabidopsis thaliana; Arabidopsis lyrata subsp. lyrata |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Arabidopsis thaliana and Arabidopsis lyrata are two closely related Brassicaceae species, which are used as models for plant comparative biology. They differ by lifestyle, predominant mating strategy, ecological niches and genome organization. In order to explore molecular basis of specific traits, we performed RNA-sequencing of vegetative rosettes from both species. Additionally, we sequenced apical meristems and inflorescences of A. lyrata that allow for intra-specific transcriptome comparison in several major developmental stages.
Please view also related dataset GSE69077 (RNA-sequencing of heat stressed A. lyrata and A. thaliana plants).
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| Overall design |
Arabidopsis lyrata and Arabidopsis thaliana aerial tissues were collected from mock treated plants, total RNA isolated and poly-A RNA populations sequenced
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| Contributor(s) |
Pecinka A, Abdelsamad A, Pietzenuk B, Rawat V, Schneeberger K |
| Citation(s) |
26382944 |
| |
| Submission date |
May 26, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Ales Pecinka |
| E-mail(s) |
pecinka@ueb.cas.cz
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| Phone |
+420 585 238 709
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| Organization name |
Institute of Experimental Botany
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| Department |
Centre of Plant Structural and Functional Genomics
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| Lab |
Pecinka group
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| Street address |
Slechtitelu 31
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| City |
Olomouc - Holice |
| ZIP/Postal code |
783 71 |
| Country |
Czech Republic |
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| Platforms (2) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
| GPL20226 |
Illumina HiSeq 2500 (Arabidopsis lyrata subsp. lyrata) |
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| Samples (7)
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| This SubSeries is part of SuperSeries: |
| GSE81496 |
Arabidopsis lyrata gene annotation using RNA-sequencing data |
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| Relations |
| BioProject |
PRJNA284922 |
| SRA |
SRP058710 |
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