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Series GSE70141 Query DataSets for GSE70141
Status Public on Feb 26, 2017
Title Regulation of nucleosome positioning by a CHD Type III chromatin remodeller and its relationship to developmental gene expression in Dictyostelium [RNA-seq]
Organism Dictyostelium discoideum
Experiment type Expression profiling by high throughput sequencing
Summary We utilized RNA-seq to profile expression levels in wild type Ax2 cells and a mutants for ChdC a member of a family of ATP-depedent chromatin remodellers in Dictyostelium discoideum. Total RNA was polyA enriched and sequenced at two stages of development: in the growth stage (0H) and loose mound stage of development (10-12H)
 
Overall design Looking at mRNA levels in Ax2 and chdC- cells
 
Contributor(s) Platt JL
Citation(s) 28330902
Submission date Jun 22, 2015
Last update date Jul 10, 2019
Contact name James Platt
Organization name University of Oxford
Street address Roosevelt Drive
City Oxfors
ZIP/Postal code OX3 7BN
Country United Kingdom
 
Platforms (1)
GPL15643 Illumina HiSeq 2000 (Dictyostelium discoideum)
Samples (8)
GSM1717459 Ax2 0H rep1 (RNA-seq)
GSM1717460 Ax2 0H rep2 (RNA-seq)
GSM1717461 chdC-null 0H rep1 (RNA-seq)
Relations
BioProject PRJNA287712
SRA SRP059757

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70141_Ax2_0H_1+2_ChdC_0H_1+2_DESeq.results.genenames.txt.gz 625.0 Kb (ftp)(http) TXT
GSE70141_Ax2_0H_1_2_Ax2_10H_1_2_DESeq.results.genenames.txt.gz 676.0 Kb (ftp)(http) TXT
GSE70141_Ax2_10H_1_2_ChdC_12H_1_2_DESeq.results.genenames.txt.gz 695.2 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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